Literature DB >> 28712045

Dynamics of Soil Bacterial Communities Over a Vegetation Season Relate to Both Soil Nutrient Status and Plant Growth Phenology.

Davide Francioli1,2, Elke Schulz3, François Buscot3,4, Thomas Reitz3,4.   

Abstract

Soil microorganisms regulate element cycling and plant nutrition, mediate co-existence of neighbors, and stabilize plant communities. Many of these effects are dependent upon environmental conditions and, in particular, on nutrient quality and availability in soils. In this context, we set up a pot experiment in order to examine the combined effects of soil nutrient availability and microbial communities on plant-soil interactions and to investigate assemblage rules for soil bacterial communities under changed nutrient conditions. Four gamma-sterilized soils, strongly differing in their nutrient contents, were obtained from different fertilization treatments of a centenary field experiment and used to grow communities of grassland plants. The sterilized soils were either self- or cross-inoculated with microbial consortia from the same four soils. Molecular fingerprinting analyses were carried out at several time points in order to identify drivers and underlying processes of microbial community assemblage. We observed that the bacterial communities that developed in the inoculated sterilized soils differed from those in the original soils, displaying dynamic shifts over time. These shifts were illustrated by the appearance of numerous OTUs that had not been detected in the original soils. The community patterns observed in the inoculated treatments suggested that bacterial community assembly was determined by both niche-mediated and stochastic-neutral processes, whereby the relative impacts of these processes changed over the course of the vegetation season. Moreover, our experimental approach allowed us not only to evaluate the effects of soil nutrients on plant performance but also to recognize a negative effect of the microbial community present in the soil that had not been fertilized for more than 100 years on plant biomass. Our findings demonstrate that soil inoculation-based approaches are valid for investigating plant-soil-microbe interactions and for examining rules that shape soil microbial community assemblages under variable ecological conditions.

Entities:  

Keywords:  B-ARISA fingerprinting; Inoculation of sterilized soil; Niche and neutral assemblage processes; Plant-soil interactions; Soil bacterial communities

Mesh:

Substances:

Year:  2017        PMID: 28712045     DOI: 10.1007/s00248-017-1012-0

Source DB:  PubMed          Journal:  Microb Ecol        ISSN: 0095-3628            Impact factor:   4.552


  28 in total

1.  Feedback with soil biota contributes to plant rarity and invasiveness in communities.

Authors:  John N Klironomos
Journal:  Nature       Date:  2002-05-02       Impact factor: 49.962

2.  Phylogenetic analysis suggests that habitat filtering is structuring marine bacterial communities across the globe.

Authors:  Mikael Pontarp; Björn Canbäck; Anders Tunlid; Per Lundberg
Journal:  Microb Ecol       Date:  2012-07       Impact factor: 4.552

3.  Reconciling niche and neutrality: the continuum hypothesis.

Authors:  Dominique Gravel; Charles D Canham; Marilou Beaudet; Christian Messier
Journal:  Ecol Lett       Date:  2006-04       Impact factor: 9.492

Review 4.  The role of root exudates in rhizosphere interactions with plants and other organisms.

Authors:  Harsh P Bais; Tiffany L Weir; Laura G Perry; Simon Gilroy; Jorge M Vivanco
Journal:  Annu Rev Plant Biol       Date:  2006       Impact factor: 26.379

5.  Competition for nitrogen between plants and soil microorganisms.

Authors:  J P Kaye; S C Hart
Journal:  Trends Ecol Evol       Date:  1997-04       Impact factor: 17.712

Review 6.  Microbial seed banks: the ecological and evolutionary implications of dormancy.

Authors:  Jay T Lennon; Stuart E Jones
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

7.  Disturbance opens recruitment sites for bacterial colonization in activated sludge.

Authors:  David C Vuono; Junko Munakata-Marr; John R Spear; Jörg E Drewes
Journal:  Environ Microbiol       Date:  2015-04-15       Impact factor: 5.491

8.  Effects of sterilization methods on the physical characteristics of soil: implications for sorption isotherm analyses.

Authors:  J B Lotrario; B J Stuart; T Lam; R R Arands; O A O'Connor; D S Kosson
Journal:  Bull Environ Contam Toxicol       Date:  1995-05       Impact factor: 2.151

9.  Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance.

Authors:  Yakov Kuzyakov; Xingliang Xu
Journal:  New Phytol       Date:  2013-03-22       Impact factor: 10.151

10.  Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies.

Authors:  Davide Francioli; Elke Schulz; Guillaume Lentendu; Tesfaye Wubet; François Buscot; Thomas Reitz
Journal:  Front Microbiol       Date:  2016-09-14       Impact factor: 5.640

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  7 in total

1.  High Salinity Inhibits Soil Bacterial Community Mediating Nitrogen Cycling.

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Journal:  Appl Environ Microbiol       Date:  2021-08-18       Impact factor: 4.792

2.  Leaf bacterial microbiota response to flooding is controlled by plant phenology in wheat (Triticum aestivum L.).

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Journal:  Sci Rep       Date:  2022-07-01       Impact factor: 4.996

3.  Effects of Epichloë gansuensis Endophyte on the Root and Rhizosphere Soil Bacteria of Achnatherum inebrians Under Different Moisture Conditions.

Authors:  Yawen Ju; Rui Zhong; Michael J Christensen; Xingxu Zhang
Journal:  Front Microbiol       Date:  2020-04-17       Impact factor: 5.640

4.  Unraveling spatiotemporal variability of arbuscular mycorrhizal fungi in a temperate grassland plot.

Authors:  Kezia Goldmann; Runa S Boeddinghaus; Sandra Klemmer; Kathleen M Regan; Anna Heintz-Buschart; Markus Fischer; Daniel Prati; Hans-Peter Piepho; Doreen Berner; Sven Marhan; Ellen Kandeler; François Buscot; Tesfaye Wubet
Journal:  Environ Microbiol       Date:  2019-06-27       Impact factor: 5.491

5.  Shifts Between and Among Populations of Wheat Rhizosphere Pseudomonas, Streptomyces and Phyllobacterium Suggest Consistent Phosphate Mobilization at Different Wheat Growth Stages Under Abiotic Stress.

Authors:  Claudia Breitkreuz; François Buscot; Mika Tarkka; Thomas Reitz
Journal:  Front Microbiol       Date:  2020-01-22       Impact factor: 5.640

6.  Inconsistent response of bacterial phyla diversity and abundance to soil salinity in a Chinese delta.

Authors:  Chao Yang; Kangjia Li; Dantong Lv; Shenyi Jiang; Junqi Sun; Hao Lin; Juan Sun
Journal:  Sci Rep       Date:  2021-06-18       Impact factor: 4.379

7.  Can We Estimate Functionality of Soil Microbial Communities from Structure-Derived Predictions? A Reality Test in Agricultural Soils.

Authors:  Claudia Breitkreuz; Anna Heintz-Buschart; François Buscot; Sara Fareed Mohamed Wahdan; Mika Tarkka; Thomas Reitz
Journal:  Microbiol Spectr       Date:  2021-08-04
  7 in total

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