Literature DB >> 28711981

Universal direct PCR amplification system: a time- and cost-effective tool for high-throughput applications.

Anis Ben-Amar1, Souheib Oueslati2, Ahmed Mliki2.   

Abstract

Taking into account the limits of current genotyping methodologies, we have established a versatile direct PCR method on intact microtissue samples without prior DNA isolation. A simple and standard protocol was developed and validated on a wide range of living organisms including bacterial and fungal strains, plant species and human samples. This allows reliable amplification of target genomic DNA fragment directly from source material using minimal amount of tissue which makes DNA purification irrelevant for a number of biological applications. The direct PCR technique established here represents an excellent alternative to traditional amplification methods used for real-time detection. Since this approach was efficiently and universally applied for high-throughput molecular screening, its implementation will offer new insights for several investigations in human health, biomedical diagnosis, plant biotechnology, as well as in applied environmental and food microbiology.

Entities:  

Keywords:  Biomedical diagnosis; DNA extraction; Direct PCR; Molecular detection; Molecular screening and genotyping; Wide range amplification

Year:  2017        PMID: 28711981      PMCID: PMC5511589          DOI: 10.1007/s13205-017-0890-7

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  18 in total

1.  Direct polymerase chain reaction from whole blood without DNA isolation.

Authors:  N Nishimura; T Nakayama; H Tonoike; K Kojima; S Kato
Journal:  Ann Clin Biochem       Date:  2000-09       Impact factor: 2.057

2.  Polymerase chain reaction (PCR) detection of Listeria monocytogenes in diluted milk and reversal of PCR inhibition caused by calcium ions.

Authors:  J Bickley; J K Short; D G McDowell; H C Parkes
Journal:  Lett Appl Microbiol       Date:  1996-02       Impact factor: 2.858

3.  High-quality plant DNA extraction for PCR: an easy approach.

Authors:  I Ahmed; M Islam; W Arshad; A Mannan; W Ahmad; B Mirza
Journal:  J Appl Genet       Date:  2009       Impact factor: 3.240

4.  Single-tube genotyping from a human hair root by direct PCR.

Authors:  Mariko Hayashida; Kyoko Iwao-Koizumi; Shigenori Murata; Kenji Kinoshita
Journal:  Anal Sci       Date:  2009-12       Impact factor: 2.081

5.  Chlamydomonas (Chlorophyceae) colony PCR.

Authors:  Muqing Cao; Yu Fu; Yan Guo; Junmin Pan
Journal:  Protoplasma       Date:  2009-02-26       Impact factor: 3.356

6.  The human hepatocyte growth factor (HGF) gene is transcriptionally activated by leukemia inhibitory factor through the Stat binding element.

Authors:  Mikio Tomida; Takeshi Saito
Journal:  Oncogene       Date:  2004-01-22       Impact factor: 9.867

7.  Direct colony PCR of several medically important fungi using Ampdirect plus.

Authors:  Mohamed M Alshahni; Koichi Makimura; Tsuyoshi Yamada; Kazuo Satoh; Yumiko Ishihara; Kosuke Takatori; Takuo Sawada
Journal:  Jpn J Infect Dis       Date:  2009-03       Impact factor: 1.362

8.  Simple and rapid detection of Salmonella strains by direct PCR amplification of the hilA gene.

Authors:  S G Pathmanathan; N Cardona-Castro; M M Sánchez-Jiménez; M M Correa-Ochoa; S D Puthucheary; K L Thong
Journal:  J Med Microbiol       Date:  2003-09       Impact factor: 2.472

9.  Direct PCR detection of Escherichia coli O157:H7.

Authors:  K A Fode-Vaughan; J S Maki; J A Benson; M L P Collins
Journal:  Lett Appl Microbiol       Date:  2003       Impact factor: 2.858

10.  Direct PCR of indigenous and invasive mosquito species: a time- and cost-effective technique of mosquito barcoding.

Authors:  A Werblow; E Flechl; S Klimpel; C Zittra; K Lebl; K Kieser; A Laciny; K Silbermayr; C Melaun; H-P Fuehrer
Journal:  Med Vet Entomol       Date:  2015-12-12       Impact factor: 2.739

View more
  2 in total

1.  Designing, optimization, and validation of whole blood direct T-ARMS PCR for precise and rapid genotyping of complex vertebral malformation in cattle.

Authors:  R R Alyethodi; U Singh; S Kumar; R Alex; G S Sengar; T V Raja; R Deb; B Prakash
Journal:  BMC Biotechnol       Date:  2021-05-22       Impact factor: 2.563

2.  Cold-inducible promoter-driven knockdown of Brachypodium antifreeze proteins confers freezing and phytopathogen susceptibility.

Authors:  Collin L Juurakko; Melissa Bredow; George C diCenzo; Virginia K Walker
Journal:  Plant Direct       Date:  2022-09-12
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.