Literature DB >> 28710757

Quick Detection of DNase II-Type Breaks in Formalin-Fixed Tissue Sections.

Candace L Minchew1,2, Vladimir V Didenko3.   

Abstract

Blunt-ended DNase II-type breaks with 5' hydroxyls are generated in phagocytic cells of any lineage during digestion of the engulfed DNA. These breaks indicate the ongoing active phagocytic reaction. They are produced by the acid deoxyribonuclease-DNase II which is the primary endonuclease responsible for DNA degradation after its engulfment.Here, we present an express approach that detects blunt-ended 5' OH DNA breaks in fixed tissue sections. The technique is simple to perform and takes only 60 min to complete. It can be useful in studies of the clearance of dying cells in oncological, inflammatory, and autoimmune disorders.

Entities:  

Keywords:  5′ OH DNA probes; Clearance of cell death; Express detection of DNase II cleavage; Labeling of phagocytosis; Phagocytic digestion of DNA; Phagolysosomes

Mesh:

Substances:

Year:  2017        PMID: 28710757      PMCID: PMC5654645          DOI: 10.1007/978-1-4939-7187-9_9

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  16 in total

1.  Semi-artificial Fluorescent Molecular Machine for DNA Damage Detection.

Authors:  Vladimir V Didenko; Candace L Minchew; Stewart Shuman; David S Baskin
Journal:  Nano Lett       Date:  2004-12       Impact factor: 11.189

2.  Proteinase K (EC 3.4.21.14).

Authors:  P J Sweeney; J M Walker
Journal:  Methods Mol Biol       Date:  1993

3.  Assessing phagocytic clearance of cell death in experimental stroke by ligatable fluorescent probes.

Authors:  Candace L Minchew; Vladimir V Didenko
Journal:  J Vis Exp       Date:  2014-05-27       Impact factor: 1.355

Review 4.  In situ ligation: a decade and a half of experience.

Authors:  Peter J Hornsby; Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

5.  In situ ligation simplified: using PCR fragments for detection of double-strand DNA breaks in tissue sections.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

6.  5'OH DNA breaks in apoptosis and their labeling by topoisomerase-based approach.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2011

7.  The cloning, genomic structure, localization, and expression of human deoxyribonuclease IIbeta.

Authors:  R J Krieser; K S MacLea; J P Park; A Eastman
Journal:  Gene       Date:  2001-05-16       Impact factor: 3.688

8.  Vaccinia DNA topoisomerase I: single-turnover and steady-state kinetic analysis of the DNA strand cleavage and ligation reactions.

Authors:  J T Stivers; S Shuman; A S Mildvan
Journal:  Biochemistry       Date:  1994-01-11       Impact factor: 3.162

Review 9.  DNase II: genes, enzymes and function.

Authors:  Cory J Evans; Renato J Aguilera
Journal:  Gene       Date:  2003-12-11       Impact factor: 3.688

10.  Autonomous and non-autonomous roles of DNase II during cell death in C. elegans embryos.

Authors:  Hsiang Yu; Huey-Jen Lai; Tai-Wei Lin; Szecheng J Lo
Journal:  Biosci Rep       Date:  2015-04-27       Impact factor: 3.840

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  2 in total

1.  Express FRET Labeling and Analysis of Phagocytic Clearance.

Authors:  Vladimir V Didenko
Journal:  Methods Mol Biol       Date:  2017

2.  DNase II mediates a parthanatos-like developmental cell death pathway in Drosophila primordial germ cells.

Authors:  Lama Tarayrah-Ibraheim; Elital Chass Maurice; Guy Hadary; Sharon Ben-Hur; Alina Kolpakova; Tslil Braun; Yoav Peleg; Keren Yacobi-Sharon; Eli Arama
Journal:  Nat Commun       Date:  2021-04-16       Impact factor: 14.919

  2 in total

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