Literature DB >> 28706310

Draft Transcriptome of Globodera ellingtonae.

Wendy S Phillips1, Sebastian Eves-van den Akker2, Inga A Zasada1.   

Abstract

Globodera ellingtonae is a newly described cyst nematode found in Idaho, Oregon, and Argentina. Here we present the first transcriptome assembly of G. ellingtonae, providing a valuable resource for comparing the evolution of expressed genes between potato cyst nematode species.

Entities:  

Keywords:  Globodera ellingtonae; potato cyst nematode; transcriptome

Year:  2017        PMID： 28706310      PMCID： PMC5507131          DOI： 10.21307/jofnem-2017-055

Source DB:  PubMed          Journal:  J Nematol        ISSN： 0022-300X            Impact factor:   1.402


  6 in total

1.  CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.

Authors:  Genis Parra; Keith Bradnam; Ian Korf
Journal:  Bioinformatics       Date:  2007-03-01       Impact factor: 6.937

2.  Description of Globodera ellingtonae n. sp. (Nematoda: Heteroderidae) from Oregon.

Authors:  Zafar A Handoo; Lynn K Carta; Andrea M Skantar; David J Chitwood
Journal:  J Nematol       Date:  2012-03       Impact factor: 1.402

3.  Full-length transcriptome assembly from RNA-Seq data without a reference genome.

Authors:  Manfred G Grabherr; Brian J Haas; Moran Yassour; Joshua Z Levin; Dawn A Thompson; Ido Amit; Xian Adiconis; Lin Fan; Raktima Raychowdhury; Qiandong Zeng; Zehua Chen; Evan Mauceli; Nir Hacohen; Andreas Gnirke; Nicholas Rhind; Federica di Palma; Bruce W Birren; Chad Nusbaum; Kerstin Lindblad-Toh; Nir Friedman; Aviv Regev
Journal:  Nat Biotechnol       Date:  2011-05-15       Impact factor: 54.908

4.  Pfam: the protein families database.

Authors:  Robert D Finn; Alex Bateman; Jody Clements; Penelope Coggill; Ruth Y Eberhardt; Sean R Eddy; Andreas Heger; Kirstie Hetherington; Liisa Holm; Jaina Mistry; Erik L L Sonnhammer; John Tate; Marco Punta
Journal:  Nucleic Acids Res       Date:  2013-11-27       Impact factor: 16.971

5.  The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode.

Authors:  James A Cotton; Catherine J Lilley; Laura M Jones; Taisei Kikuchi; Adam J Reid; Peter Thorpe; Isheng J Tsai; Helen Beasley; Vivian Blok; Peter J A Cock; Sebastian Eves-van den Akker; Nancy Holroyd; Martin Hunt; Sophie Mantelin; Hardeep Naghra; Arnab Pain; Juan E Palomares-Rius; Magdalena Zarowiecki; Matthew Berriman; John T Jones; Peter E Urwin
Journal:  Genome Biol       Date:  2014-03-03       Impact factor: 13.583

6.  The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence.

Authors:  Sebastian Eves-van den Akker; Dominik R Laetsch; Peter Thorpe; Catherine J Lilley; Etienne G J Danchin; Martine Da Rocha; Corinne Rancurel; Nancy E Holroyd; James A Cotton; Amir Szitenberg; Eric Grenier; Josselin Montarry; Benjamin Mimee; Marc-Olivier Duceppe; Ian Boyes; Jessica M C Marvin; Laura M Jones; Hazijah B Yusup; Joël Lafond-Lapalme; Magali Esquibet; Michael Sabeh; Michael Rott; Hein Overmars; Anna Finkers-Tomczak; Geert Smant; Georgios Koutsovoulos; Vivian Blok; Sophie Mantelin; Peter J A Cock; Wendy Phillips; Bernard Henrissat; Peter E Urwin; Mark Blaxter; John T Jones
Journal:  Genome Biol       Date:  2016-06-10       Impact factor: 13.583
  6 in total
  1 in total

1.  Duplication of hsp-110 Is Implicated in Differential Success of Globodera Species under Climate Change.

Authors:  Laura M Jones; Sebastian Eves-van den Akker; Patricija van-Oosten Hawle; Howard J Atkinson; Peter E Urwin
Journal:  Mol Biol Evol       Date:  2018-10-01       Impact factor: 16.240
  1 in total

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