Literature DB >> 28702939

Genetic diversity and relatedness among ornamental purslane (Portulaca L.) accessions unraveled by SRAP markers.

Sizhen Jia1,2, Zhiming Yan1,2, Yuanhua Wang1,2, Yue Wei1,2, Zhenqiang Xie1,2, Fei Zhang3.   

Abstract

Ornamental purslanes (Portulaca L.) are a popular annual bedding and container plant for landscaping. Little information is available concerning the genetic characterization of ornamental purslane resources thus far. The purpose of this study was to investigate the genetic diversity and relationships present in a collection of ornamental purslanes from Portulaca umbraticola and P. grandiflora cultivated in China, using sequence-related amplified polymorphism (SRAP) markers. The genotyping showed that 16 SRAP primer combinations totally produced 261 informative fragments and averaged 16.31 per primer combination. The major allele frequency and Nei's gene diversity was calculated at 0.78 and 0.31 across the loci, indicative of a moderate low diversity. Both unweighted pair group method with arithmetic average (UPGMA) clustering and a Bayesian-based approach apparently assigned the whole accessions into two sub-groups: P. umbraticola and P. grandiflora, well concordant with the botanical classification and flower type. The findings provide a brandnew understanding of genetic diversity and population structure present in ornamental purslane, and benefit a sound design of breeding programs in future.

Entities:  

Keywords:  Genetic diversity; Population structure; Portulaca L.; Sequence-related amplified polymorphism marker

Year:  2017        PMID: 28702939      PMCID: PMC5507807          DOI: 10.1007/s13205-017-0881-8

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  12 in total

1.  The analgesic and anti-inflammatory effects of Portulaca oleracea L. subsp. Sativa (Haw.) Celak.

Authors:  K Chan; M W Islam; M Kamil; R Radhakrishnan; M N Zakaria; M Habibullah; A Attas
Journal:  J Ethnopharmacol       Date:  2000-12       Impact factor: 4.360

2.  PowerMarker: an integrated analysis environment for genetic marker analysis.

Authors:  Kejun Liu; Spencer V Muse
Journal:  Bioinformatics       Date:  2005-02-10       Impact factor: 6.937

3.  Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study.

Authors:  G Evanno; S Regnaut; J Goudet
Journal:  Mol Ecol       Date:  2005-07       Impact factor: 6.185

4.  Rosetteness in Portulaca grandiflora: an altered genetic expression.

Authors:  P Venu-Babu; V K Ogale; S D Mishra
Journal:  Mol Biol Rep       Date:  1996       Impact factor: 2.316

5.  Tolerance of Portulaca grandiflora to individual and combined application of Ni, Pb and Zn.

Authors:  N Mihailovic; G Andrejić; Ž Dželetović
Journal:  Bull Environ Contam Toxicol       Date:  2014-11-07       Impact factor: 2.151

6.  CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP.

Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

7.  Molecular phylogenetics, historical biogeography, and chromosome number evolution of Portulaca (Portulacaceae).

Authors:  Gilberto Ocampo; J Travis Columbus
Journal:  Mol Phylogenet Evol       Date:  2011-12-27       Impact factor: 4.286

8.  Mathematical model for studying genetic variation in terms of restriction endonucleases.

Authors:  M Nei; W H Li
Journal:  Proc Natl Acad Sci U S A       Date:  1979-10       Impact factor: 11.205

9.  Genetic diversity, population structure and association analysis in cut chrysanthemum (Chrysanthemum morifolium Ramat.).

Authors:  Pirui Li; Fei Zhang; Sumei Chen; Jiafu Jiang; Haibin Wang; Jiangshuo Su; Weimin Fang; Zhiyong Guan; Fadi Chen
Journal:  Mol Genet Genomics       Date:  2016-01-16       Impact factor: 3.291

10.  Inferring weak population structure with the assistance of sample group information.

Authors:  Melissa J Hubisz; Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Mol Ecol Resour       Date:  2009-04-01       Impact factor: 7.090

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  3 in total

1.  Intra-population genetic diversity of Buchloe dactyloides (Nutt.) Engelm (buffalograss) determined using morphological traits and sequence-related amplified polymorphism markers.

Authors:  Feifei Wu; Junhan Chen; Jianli Wang; Xianguo Wang; Yan Lu; Yaming Ning; Yongxiang Li
Journal:  3 Biotech       Date:  2019-02-20       Impact factor: 2.406

2.  Assessment of Genetic Relationships between Streptocarpus x hybridus V. Parents and F1 Progenies Using SRAP Markers and FT-IR Spectroscopy.

Authors:  Monica Hârţa; Orsolya Borsai; Cristina M Muntean; Nicoleta E Dina; Alexandra Fǎlǎmaş; Loredana Elena Olar; Katalin Szabo; Doru Pamfil; Răzvan Ştefan
Journal:  Plants (Basel)       Date:  2020-01-28

3.  Genetic diversity analysis and population structure of some Iranian Fenugreek (Trigonella foenum-graecum L.) landraces using SRAP Markers.

Authors:  Marzieh Amiriyan; Abdolali Shojaeiyan; Abbas Yadollahi; Masoud Maleki; Zeinab Bahari
Journal:  Mol Biol Res Commun       Date:  2019-12
  3 in total

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