| Literature DB >> 28701861 |
Cameron L Randall1,2, Casey D Wright1,2, Jonathan M Chernus3, Daniel W McNeil1,2,4, Eleanor Feingold3,4, Richard J Crout4,5, Katherine Neiswanger4,6, Robert J Weyant4,7, John R Shaffer3,4, Mary L Marazita3,4,6.
Abstract
BACKGROUND: Acute and chronic orofacial pain can significantly impact overall health and functioning. Associations between fear of pain and the experience of orofacial pain are well-documented, and environmental, behavioral, and cognitive components of fear of pain have been elucidated. Little is known, however, regarding the specific genes contributing to fear of pain.Entities:
Mesh:
Year: 2017 PMID: 28701861 PMCID: PMC5494109 DOI: 10.1155/2017/7375468
Source DB: PubMed Journal: Pain Res Manag ISSN: 1203-6765 Impact factor: 3.037
Demographic characteristics of study sample.
| Mean/ | Std. deviation/% | |
|---|---|---|
| Age (years) | 32.2 | 11.0 |
| Sex | ||
| Men | 383 | 38.7% |
| Women | 607 | 61.3% |
| Race/ethnicity | ||
| Caucasian | 1,367 | 86.5% |
| African American | 159 | 10.0% |
| Hispanic | 13 | 0.8% |
| Native American/Asian/other | 23 | 1.4% |
| Missing | 21 | 1.3% |
| Income | ||
| Less than $10,000 USD | 251 | 25.5% |
| $10,000 to $14,999 | 202 | 20.4% |
| $15,000 to $24,999 | 182 | 18.4% |
| $25,000 to $34,999 | 115 | 11.6% |
| $35,000 to $49,999 | 130 | 13.1% |
| $50,000 to $74,999 | 52 | 5.3% |
| $75,000 to $99,999 | 37 | 3.7% |
| $100,000 to $149,999 | 11 | 1.1% |
| $150,000 to $199,999 | 2 | 0.2% |
| $200,000 or more | 8 | 0.8% |
| Education | ||
| No high school diploma | 264 | 26.7% |
| High school diploma/GED | 371 | 37.5% |
| Technical school | 115 | 11.6% |
| Some college, no degree | 105 | 10.6% |
| Undergraduate degree | 84 | 8.5% |
| Graduate degree | 51 | 5.2% |
| Fear of pain | ||
| Total score | 23.6 | 8.1 |
| Fear of minor pain | 6.0 | 2.5 |
| Fear of severe pain | 9.8 | 3.7 |
| Fear of medical/dental pain | 7.7 | 3.3 |
Bivariate correlations of covariates used in GWAS model.
| Sex | Age | Education | Income | |
|---|---|---|---|---|
| Sex | 1 | |||
| Age | −.030 | 1 | ||
| Education | .078 | .382 | 1 | |
| Income | −.007 | −.011 | .006 | 1 |
Note. N = 990. ∗ = correlation is significant at the 0.05 level (2-tailed); ∗∗ = correlation is significant at the 0.01 level (2-tailed).
Multiple linear regression results for FPQ-9 total score.
| Model |
| SE |
|
|
| Lower bound | Upper bound | |
|---|---|---|---|---|---|---|---|---|
| 1 | (Constant) | 19.717 | .943 | 20.911 | <0.001 | 17.866 | 21.567 | |
| Age | .061 | .025 | .082 | 2.461 | 0.014 | .012 | .109 | |
| Education | −.091 | .187 | −.016 | −.488 | 0.626 | −.458 | .276 | |
| Income | −.104 | .131 | −.025 | −.798 | 0.425 | −.361 | .152 | |
| Sex | 3.861 | .517 | .232 | 7.468 | <0.001 | 2.846 | 4.875 | |
Note. B = raw regression coefficient. SE = standard error. β = standardized regression coefficient. Sex dichotomized as males = 0; females = 1.
Multiple linear regression results for FPQ-9 fear of medical/dental pain subscale score.
| Model |
| SE |
|
|
| Lower bound | Upper bound | |
|---|---|---|---|---|---|---|---|---|
| 1 | (Constant) | 6.789 | .391 | 17.363 | <0.001 | 6.002 | 7.557 | |
| Age | .006 | .010 | .020 | .592 | 0.554 | −.014 | .026 | |
| Education | −.113 | .078 | −.049 | −1.452 | 0.147 | −.265 | .040 | |
| Income | −.015 | .054 | −.008 | −.269 | 0.788 | −.121 | .092 | |
| Sex | 1.525 | .214 | .222 | 7.114 | <0.001 | 1.104 | 1.946 | |
Note. B = raw regression coefficient. SE = standard error. β = standardized regression coefficient. Sex dichotomized as males = 0; females = 1.
Multiple linear regression results for FPQ-9 fear of severe pain subscale score.
| Model |
| SE |
|
|
| Lower bound | Upper bound | |
|---|---|---|---|---|---|---|---|---|
| 1 | (Constant) | 8.010 | .426 | 18.800 | <0.001 | 7.174 | 8.846 | |
| Age | .022 | .011 | .066 | 1.970 | 0.049 | .000 | .044 | |
| Education | .172 | .084 | .068 | 2.035 | 0.042 | .006 | .338 | |
| Income | −.054 | .059 | −.028 | −.909 | 0.364 | −.170 | .062 | |
| Sex | 1.665 | .234 | .221 | 7.126 | <0.001 | 1.206 | 2.123 | |
Note. B = raw regression coefficient. SE = standard error. β = standardized regression coefficient. Sex dichotomized as males = 0; females = 1.
Multiple linear regression results for FPQ-9 fear of minor pain subscale score.
| Model |
| SE |
|
|
| Lower bound | Upper bound | |
|---|---|---|---|---|---|---|---|---|
| 1 | (Constant) | 4.917 | .298 | 16.482 | <0.001 | 4.332 | 5.502 | |
| Age | .033 | .008 | .142 | 4.188 | <0.001 | .017 | .048 | |
| Education | −.151 | .059 | −.087 | −2.544 | 0.011 | −.267 | −.034 | |
| Income | −.036 | .041 | −.027 | −.870 | 0.385 | −.117 | .045 | |
| Sex | .671 | .164 | .129 | 4.102 | <0.001 | .350 | .992 | |
Note. B = raw regression coefficient. SE = standard error. β = standardized regression coefficient. Sex dichotomized as males = 0; females = 1.
Figure 1Manhattan plots (a) show the –log10-transformed p value (y-axis), indicating significance of the association, for each SNP across the genome (x-axis; organized by physical position on each chromosome). The horizontal dashed lined indicates the threshold for genome-wide significance. Quantile-quantile plots (b) show the –log10-transformed p values observed in the GWAS (y-axis) plotted against the expected distribution of p values under the null hypothesis of no association. Chromosome 23 is the X chromosome.
Figure 2Regional association plots for loci significantly associated with fear of minor pain. Each point depicts the significance (–log10-transformed p value; y-axis) and physical position (Mb; left x-axis) of a SNP. The leading SNP is shown as a purple circle and its reference sequence designation is indicated. Open circles represent imputed SNPs, and closed circles represent genotyped SNPs. The coloring of the points represents the LD (i.e., correlation; r2) of the SNP with the leading SNP. The blue recombination rate overlay (cM/Mb; right x-axis) provides information about the LD-block structure of region. Locations of known genes are shown below the plot.
Results for the leading SNP for loci showing significant or suggestive evidence of association with fear of pain.
| Phenotype | SNP | Chr. | BP | A1 | A2 | MAF | Type | Info | Beta |
|
|---|---|---|---|---|---|---|---|---|---|---|
| Total | rs73782827 | 6 | 161667052 | G | T | 0.01 | Imputed | 0.91 | −10.84 | 9.87 |
| rs112510117 | 8 | 125429261 | A | G | 0.01 | Imputed | 0.912 | −8.44 | 7.16 | |
| rs7084783 | 10 | 105324170 | G | A | 0.49 | Imputed | 0.982 | −1.69 | 2.44 | |
| rs56875752 | 17 | 12599002 | C | A | 0.11 | Imputed | 0.976 | 2.91 | 5.94 | |
|
| ||||||||||
| Minor | rs1146361 | 1 | 116658817 | C | T | 0.15 | Imputed | 0.994 | −0.81 | 8.12 |
| rs6542838 | 2 | 99452458 | C | T | 0.44 | Imputed | 0.997 | −0.61 | 1.56 | |
| rs113865232 | 2 | 225213815 | T | C | 0.01 | Imputed | 0.986 | −2.63 | 6.74 | |
| rs13411339 | 2 | 237231135 | T | C | 0.03 | Imputed | 0.961 | −1.77 | 9.12 | |
| rs9871066 | 3 | 97202242 | G | A | 0.02 | Imputed | 0.993 | −2.56 | 3.44 | |
| rs2699039 | 4 | 160353222 | A | G | 0.02 | Imputed | 0.993 | −2.54 | 3.74 | |
| rs73746987 | 6 | 71820675 | T | C | 0.01 | Imputed | 0.974 | −3.40 | 2.26 | |
| rs73782827 | 6 | 161667052 | G | T | 0.01 | Imputed | 0.91 | −3.80 | 3.05 | |
| rs34139189 | 6 | 162293644 | G | A | 0.14 | Imputed | 0.796 | −0.93 | 8.22 | |
| rs73547001 | 8 | 24862630 | G | A | 0.01 | Imputed | 0.89 | −3.35 | 1.30 | |
| rs73700552 | 8 | 107068214 | C | T | 0.01 | Imputed | 0.969 | −3.43 | 1.30 | |
| rs113248907 | 8 | 125418123 | A | C | 0.01 | Imputed | 0.95 | −3.41 | 1.91 | |
| rs1871535 | 8 | 145639586 | C | T | 0.02 | Imputed | 0.878 | −2.09 | 2.91 | |
| rs12252682 | 10 | 93810742 | C | G | 0.02 | Imputed | 0.852 | −2.45 | 5.89 | |
| rs687735 | 11 | 64047152 | A | G | 0.01 | Imputed | 0.874 | −3.26 | 8.96 | |
| rs11871659 | 17 | 40692638 | C | T | 0.03 | Imputed | 0.979 | −2.08 | 5.27 | |
| rs2223785 | 20 | 30676316 | C | T | 0.02 | Imputed | 0.968 | −2.80 | 3.39 | |
| rs6008192 | 22 | 47804243 | T | G | 0.01 | Imputed | 0.931 | −2.99 | 4.79 | |
| rs73558352 | 23 | 123751759 | T | G | 0.02 | Imputed | 0.639 | −2.00 | 4.84 | |
|
| ||||||||||
| Severe | rs553086 | 11 | 56852098 | A | G | 0.23 | Genotyped | 1 | 0.92 | 2.69 |
| rs10844026 | 12 | 31994740 | A | T | 0.24 | Imputed | 0.995 | −0.95 | 7.69 | |
| rs61923480 | 12 | 54884202 | C | A | 0.02 | Imputed | 0.915 | 2.52 | 4.28 | |
| rs61930374 | 12 | 71271433 | C | G | 0.20 | Imputed | 0.933 | −1.09 | 5.12 | |
| rs112664965 | 13 | 51050827 | A | G | 0.04 | Imputed | 0.997 | −1.88 | 2.18 | |
| rs7178691 | 15 | 53899306 | A | G | 0.32 | Imputed | 1 | −0.82 | 2.86 | |
| rs56875752 | 17 | 12599002 | C | A | 0.11 | Imputed | 0.976 | 1.38 | 1.57 | |
| rs3975333 | 19 | 53805815 | T | A | 0.09 | Imputed | 0.793 | 1.49 | 2.29 | |
|
| ||||||||||
| Medical | rs114134414 | 1 | 74708559 | C | A | 0.03 | Imputed | 0.899 | 2.15 | 9.29 |
| chr2:99411513 | 2 | 99411513 | A | T | 0.14 | Imputed | 0.719 | −1.29 | 1.43 | |
| rs72965720 | 6 | 128023381 | C | A | 0.08 | Imputed | 0.999 | 1.43 | 2.06 | |
| rs9901616 | 17 | 29336745 | T | C | 0.03 | Imputed | 0.895 | −2.31 | 7.69 | |
| rs10422046 | 19 | 982968 | A | G | 0.11 | Imputed | 0.761 | 1.38 | 1.22 | |
| rs5979239 | 23 | 10009993 | A | G | 0.04 | Imputed | 0.972 | −2.04 | 1.82 | |
Note. chr. = chromosome; BP = base position; A1 = minor (effect) allele; A2 = major allele; MAF = minor allele frequency; info = imputation information metric, an indicator imputation quality; beta = effect size per minor allele.