Literature DB >> 23269371

Improved whole-chromosome phasing for disease and population genetic studies.

Olivier Delaneau, Jean-Francois Zagury, Jonathan Marchini.   

Abstract

Mesh：

Year:  2013        PMID： 23269371     DOI： 10.1038/nmeth.2307

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  7 in total

1.  A linear complexity phasing method for thousands of genomes.

Authors:  Olivier Delaneau; Jonathan Marchini; Jean-François Zagury
Journal:  Nat Methods       Date:  2011-12-04       Impact factor: 28.547

2.  A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase.

Authors:  Paul Scheet; Matthew Stephens
Journal:  Am J Hum Genet       Date:  2006-02-17       Impact factor: 11.025

3.  Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering.

Authors:  Sharon R Browning; Brian L Browning
Journal:  Am J Hum Genet       Date:  2007-09-21       Impact factor: 11.025

4.  Phasing of many thousands of genotyped samples.

Authors:  Amy L Williams; Nick Patterson; Joseph Glessner; Hakon Hakonarson; David Reich
Journal:  Am J Hum Genet       Date:  2012-08-10       Impact factor: 11.025

5.  MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.

Authors:  Yun Li; Cristen J Willer; Jun Ding; Paul Scheet; Gonçalo R Abecasis
Journal:  Genet Epidemiol       Date:  2010-12       Impact factor: 2.135

6.  Fast and accurate genotype imputation in genome-wide association studies through pre-phasing.

Authors:  Bryan Howie; Christian Fuchsberger; Matthew Stephens; Jonathan Marchini; Gonçalo R Abecasis
Journal:  Nat Genet       Date:  2012-07-22       Impact factor: 38.330

7.  Genotype imputation with thousands of genomes.

Authors:  Bryan Howie; Jonathan Marchini; Matthew Stephens
Journal:  G3 (Bethesda)       Date:  2011-11-01       Impact factor: 3.154
  7 in total
  665 in total

1.  Deep History of East Asian Populations Revealed Through Genetic Analysis of the Ainu.

Authors:  Choongwon Jeong; Shigeki Nakagome; Anna Di Rienzo
Journal:  Genetics       Date:  2015-10-23       Impact factor: 4.562

2.  Population-specific genotype imputations using minimac or IMPUTE2.

Authors:  Elisabeth M van Leeuwen; Alexandros Kanterakis; Patrick Deelen; Mathijs V Kattenberg; P Eline Slagboom; Paul I W de Bakker; Cisca Wijmenga; Morris A Swertz; Dorret I Boomsma; Cornelia M van Duijn; Lennart C Karssen; Jouke Jan Hottenga
Journal:  Nat Protoc       Date:  2015-07-30       Impact factor: 13.491

3.  Layered genetic control of DNA methylation and gene expression: a locus of multiple sclerosis in healthy individuals.

Authors:  Jean Shin; Celine Bourdon; Manon Bernard; Michael D Wilson; Eva Reischl; Melanie Waldenberger; Barbara Ruggeri; Gunter Schumann; Sylvane Desrivieres; Alexander Leemans; Michal Abrahamowicz; Gabriel Leonard; Louis Richer; Luigi Bouchard; Daniel Gaudet; Tomas Paus; Zdenka Pausova
Journal:  Hum Mol Genet       Date:  2015-07-28       Impact factor: 6.150

4.  Local ancestry transitions modify snp-trait associations.

Authors:  Alexandra E Fish; Dana C Crawford; John A Capra; William S Bush
Journal:  Pac Symp Biocomput       Date:  2018

5.  Genome-wide association study of bipolar disorder accounting for effect of body mass index identifies a new risk allele in TCF7L2.

Authors:  S J Winham; A B Cuellar-Barboza; A Oliveros; S L McElroy; S Crow; C Colby; D-S Choi; M Chauhan; M Frye; J M Biernacka
Journal:  Mol Psychiatry       Date:  2013-12-10       Impact factor: 15.992

6.  Improving power of association tests using multiple sets of imputed genotypes from distributed reference panels.

Authors:  Wei Zhou; Lars G Fritsche; Sayantan Das; He Zhang; Jonas B Nielsen; Oddgeir L Holmen; Jin Chen; Maoxuan Lin; Maiken B Elvestad; Kristian Hveem; Goncalo R Abecasis; Hyun Min Kang; Cristen J Willer
Journal:  Genet Epidemiol       Date:  2017-09-01       Impact factor: 2.135

7.  Genetic variation near IRS1 is associated with adiposity and a favorable metabolic profile in U.S. Hispanics/Latinos.

Authors:  Qibin Qi; Stephanie M Gogarten; Leslie S Emery; Tin Louie; Adrienne Stilp; Jianwen Cai; Neil Schneiderman; M Larissa Avilés-Santa; Robert C Kaplan; Kari E North; Cathy C Laurie; Ruth J F Loos; Carmen R Isasi
Journal:  Obesity (Silver Spring)       Date:  2016-09-24       Impact factor: 5.002

8.  A common functional regulatory variant at a type 2 diabetes locus upregulates ARAP1 expression in the pancreatic beta cell.

Authors:  Jennifer R Kulzer; Michael L Stitzel; Mario A Morken; Jeroen R Huyghe; Christian Fuchsberger; Johanna Kuusisto; Markku Laakso; Michael Boehnke; Francis S Collins; Karen L Mohlke
Journal:  Am J Hum Genet       Date:  2014-01-16       Impact factor: 11.025

9.  Genome-Wide Association Studies of Metabolites in Patients with CKD Identify Multiple Loci and Illuminate Tubular Transport Mechanisms.

Authors:  Yong Li; Peggy Sekula; Matthias Wuttke; Judith Wahrheit; Birgit Hausknecht; Ulla T Schultheiss; Wolfram Gronwald; Pascal Schlosser; Sara Tucci; Arif B Ekici; Ute Spiekerkoetter; Florian Kronenberg; Kai-Uwe Eckardt; Peter J Oefner; Anna Köttgen
Journal:  J Am Soc Nephrol       Date:  2018-03-15       Impact factor: 10.121

10.  Next-generation genotype imputation service and methods.

Authors:  Sayantan Das; Lukas Forer; Sebastian Schönherr; Carlo Sidore; Adam E Locke; Alan Kwong; Scott I Vrieze; Emily Y Chew; Shawn Levy; Matt McGue; David Schlessinger; Dwight Stambolian; Po-Ru Loh; William G Iacono; Anand Swaroop; Laura J Scott; Francesco Cucca; Florian Kronenberg; Michael Boehnke; Gonçalo R Abecasis; Christian Fuchsberger
Journal:  Nat Genet       Date:  2016-08-29       Impact factor: 38.330
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