| Literature DB >> 28696355 |
Karobi Moitra1, Sonia Garcia2,3, Michelle Jaldin4,5, Clementine Etoundi6, Donna Cooper7, Anna Roland8, Patrice Dixon9, Sandra Reyes10, Sevilay Turan11, Sharon Terry12, Michael Dean13.
Abstract
Pseudoxanthoma elasticum (PXE) is an autosomal recessive disorder characterized by the mineralization of connective tissues in the body. Primary manifestation of PXE occurs in the tissues of the skin, eyes, and cardiovascular system. PXE is primarily caused by mutations in the ABCC6 gene. The ABCC6 gene encodes the trans-membrane protein ABCC6, which is highly expressed in the kidneys and liver. PXE has high phenotypic variability, which may possibly be affected by several modifier genes. Disease advocacy organizations have had a pivotal role in bringing rare disease research to the forefront and in helping to sustain research funding for rare genetic diseases in order to help find a treatment for these diseases, pseudoxanthoma elasticum included. Because of these initiatives, individuals affected by these conditions benefit by being scientifically informed about their condition, having an effective support mechanism, and also by contributing to scientific research efforts and banking of biological samples. This rapid progress would not have been possible without the aid of disease advocacy organizations such as PXE International.Entities:
Keywords: mineralization; next generation sequencing; patient advocacy; pseudoxanthoma elasticum; rare disease
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Year: 2017 PMID: 28696355 PMCID: PMC5535978 DOI: 10.3390/ijms18071488
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1(a) The Chromosomal location of the ABCC6 gene. The location of the ABCC6 gene is on chromosome 16 at the specific locus 16p13.1 it spans approximately 75 kb of DNA and is composed of 31 exons; (b) Cartoon representation of the genomic organization of the 2 transcribed pseudogenes of ABCC6-ABCC6P1 and ABCC6P2. The pseudogenes flank the parental ABCC6 gene on chromosome 16p13. Arrows indicate the direction of transcription. The exons of ABCC6P1 and ABCC6P2 genes are shown in more detail. Exons are represented by black vertical lines and numbered in 5′ to 3′ order. All the pseudogene exons share 98–100% identity with the parental ABCC6 except exon 10 of ABCC6P1 which shares 18.7% identity and is non-homologous.
Figure 2The predicted two-dimensional topology of the ABCC6 protein. The ABCC6 protein is predicted to contain three transmembrane domains (TMDs)—TMD0, TMD1, and TMD2. TMD0 is predicted to be comprised of five TM alpha helices, while the other two TMDs contain six TM helices apiece, giving a total of 17 TM helices making up the full transporter. The dotted lines represent the Nucleotide Binding Domains (NBD’s) and ABCC6 has 2 of them. The Walker motifs in the NBD’s are represented by the blue boxes between the dotted lines. The plasma membrane is represented in brown, while the TMD’s are represented by blue cylinders and the extracellular and intracellular domains (loops) are represented by unbroken lines.
Figure 3(a) Papules on the neck of a pseudoxanthoma elasticum (PXE) patient. Calcification of the elastic fibers in the skin may lead to cutaneous lesions, which are small, yellowish, flat papules that develop typically on the neck, as depicted in the photograph; (b) Skin biopsy of a PXE patient depicting calcium deposition. The tissue has been stained with von Kossa staining, showing the calcium deposition in the tissue (brownish-red granules). Photograph is the property of PXE International. It has been used with permission and collected with approval from Genetic Alliance IRB #00003999, PXE001 protocol.
Figure 4Ocular manifestation of PXE in the form of angioid streaks in the eye of a PXE patient. Angioid streaks are reddish brown or grey lines that may radiate from the optic disc (arrow) and result from calcification of elastic fibers of the retina. Angioid streaks may lead to cracks in the elastic membrane (Bruch’s membrane) behind the retina.
Figure 5Overview of the Roche-454 technology for next-generation sequencing. The Roche-454 technique allows thousands of pyrosequencing reactions to be carried out in parallel. The DNA templates are sequenced using a sequencing-by-synthesis approach. As each nucleotide is added it is detected through a chemiluminescent reaction and documented photographically. In detail: when a complimentary nucleotide is added to the template strand it releases a pyrophosphate that ultimately produces ATP through enzyme catalyzed reactions. The enzyme sulfurylase assists in the overall biochemical reaction that helps convert pyrophosphate (PPi) to ATP when adenosine 5′ phosphosulfate (APS) is present in the reaction. Luciferase can then oxidize luciferin in the presence of this ATP to form oxyluciferin in a reaction that produces a light signal each time a nucleotide is added. This light is documented by a camera and can be visualized in a pyrogram. The blue arrows depict the flow of the process from library construction through to sequencing. The purple arrows show the actual pyrosequencing process that is described in the text. The light purple arrow in the right hand corner box depicts sulfurylase and adjacent blue arrow depicts luciferase. The vertical arrows in right hand corner box depict the generation of ATP and the light emitting reaction. PTP: Picotiter Plate.