Literature DB >> 28696306

Continuous immunotypes describe human immune variation and predict diverse responses.

Kevin J Kaczorowski1,2,3, Karthik Shekhar4, Dieudonné Nkulikiyimfura5, Cornelia L Dekker6, Holden Maecker7, Mark M Davis8,9,10, Arup K Chakraborty11,2,3,12,13, Petter Brodin14,15.   

Abstract

The immune system consists of many specialized cell populations that communicate with each other to achieve systemic immune responses. Our analyses of various measured immune cell population frequencies in healthy humans and their responses to diverse stimuli show that human immune variation is continuous in nature, rather than characterized by discrete groups of similar individuals. We show that the same three key combinations of immune cell population frequencies can define an individual's immunotype and predict a diverse set of functional responses to cytokine stimulation. We find that, even though interindividual variations in specific cell population frequencies can be large, unrelated individuals of younger age have more homogeneous immunotypes than older individuals. Across age groups, cytomegalovirus seropositive individuals displayed immunotypes characteristic of older individuals. The conceptual framework for defining immunotypes suggested by our results could guide the development of better therapies that appropriately modulate collective immunotypes, rather than individual immune components.

Entities:  

Keywords:  aging; human immune variation; immune cell composition; systems immunology

Mesh:

Year:  2017        PMID: 28696306      PMCID: PMC5544312          DOI: 10.1073/pnas.1705065114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures.

Authors:  Helder I Nakaya; Thomas Hagan; Sai S Duraisingham; Eva K Lee; Marcin Kwissa; Nadine Rouphael; Daniela Frasca; Merril Gersten; Aneesh K Mehta; Renaud Gaujoux; Gui-Mei Li; Shakti Gupta; Rafi Ahmed; Mark J Mulligan; Shai Shen-Orr; Bonnie B Blomberg; Shankar Subramaniam; Bali Pulendran
Journal:  Immunity       Date:  2015-12-15       Impact factor: 31.745

2.  Evidence of premature immune aging in patients thymectomized during early childhood.

Authors:  Delphine Sauce; Martin Larsen; Solène Fastenackels; Anne Duperrier; Michael Keller; Beatrix Grubeck-Loebenstein; Christophe Ferrand; Patrice Debré; Daniel Sidi; Victor Appay
Journal:  J Clin Invest       Date:  2009-09-21       Impact factor: 14.808

3.  The inverted CD4:CD8 ratio is associated with cytomegalovirus, poor cognitive and functional states in older adults.

Authors:  Bruna Luz Correa; Ana Paula Ornaghi; Guilherme Cerutti Muller; Paula Engroff; Rodrigo Pestana Lopes; Irênio Gomes da Silva Filho; Jos A Bosch; Cristina Bonorino; Moisés Evandro Bauer
Journal:  Neuroimmunomodulation       Date:  2014-02-06       Impact factor: 2.492

4.  Variation in the human immune system is largely driven by non-heritable influences.

Authors:  Petter Brodin; Vladimir Jojic; Tianxiang Gao; Sanchita Bhattacharya; Cesar J Lopez Angel; David Furman; Shai Shen-Orr; Cornelia L Dekker; Gary E Swan; Atul J Butte; Holden T Maecker; Mark M Davis
Journal:  Cell       Date:  2015-01-15       Impact factor: 41.582

Review 5.  The impact of CMV infection on survival in older humans.

Authors:  Graham Pawelec; Janet E McElhaney; Allison E Aiello; Evelyna Derhovanessian
Journal:  Curr Opin Immunol       Date:  2012-04-27       Impact factor: 7.486

6.  Global analyses of human immune variation reveal baseline predictors of postvaccination responses.

Authors:  John S Tsang; Pamela L Schwartzberg; Yuri Kotliarov; Angelique Biancotto; Zhi Xie; Ronald N Germain; Ena Wang; Matthew J Olnes; Manikandan Narayanan; Hana Golding; Susan Moir; Howard B Dickler; Shira Perl; Foo Cheung
Journal:  Cell       Date:  2014-04-10       Impact factor: 41.582

7.  A major quantitative trait locus for CD4-CD8 ratio is located on chromosome 11.

Authors:  D M Evans; G Zhu; D L Duffy; I H Frazer; G W Montgomery; N G Martin
Journal:  Genes Immun       Date:  2004-11       Impact factor: 2.676

Review 8.  Innate cell communication kick-starts pathogen-specific immunity.

Authors:  Amariliz Rivera; Mark C Siracusa; George S Yap; William C Gause
Journal:  Nat Immunol       Date:  2016-04       Impact factor: 25.606

9.  Systems biology of vaccination for seasonal influenza in humans.

Authors:  Helder I Nakaya; Jens Wrammert; Eva K Lee; Luigi Racioppi; Stephanie Marie-Kunze; W Nicholas Haining; Anthony R Means; Sudhir P Kasturi; Nooruddin Khan; Gui-Mei Li; Megan McCausland; Vibhu Kanchan; Kenneth E Kokko; Shuzhao Li; Rivka Elbein; Aneesh K Mehta; Alan Aderem; Kanta Subbarao; Rafi Ahmed; Bali Pulendran
Journal:  Nat Immunol       Date:  2011-07-10       Impact factor: 25.606

10.  The cellular composition of the human immune system is shaped by age and cohabitation.

Authors:  Edward J Carr; James Dooley; Michelle A Linterman; Adrian Liston; Josselyn E Garcia-Perez; Vasiliki Lagou; James C Lee; Carine Wouters; Isabelle Meyts; An Goris; Guy Boeckxstaens
Journal:  Nat Immunol       Date:  2016-02-15       Impact factor: 25.606

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  37 in total

1.  Single-Cell Chromatin Modification Profiling Reveals Increased Epigenetic Variations with Aging.

Authors:  Peggie Cheung; Francesco Vallania; Hayley C Warsinske; Michele Donato; Steven Schaffert; Sarah E Chang; Mai Dvorak; Cornelia L Dekker; Mark M Davis; Paul J Utz; Purvesh Khatri; Alex J Kuo
Journal:  Cell       Date:  2018-04-26       Impact factor: 41.582

2.  B lymphocyte alterations accompany abatacept resistance in new-onset type 1 diabetes.

Authors:  Peter S Linsley; Carla J Greenbaum; Cate Speake; S Alice Long; Matthew J Dufort
Journal:  JCI Insight       Date:  2019-02-21

3.  Computational Immune Monitoring Reveals Abnormal Double-Negative T Cells Present across Human Tumor Types.

Authors:  Allison R Greenplate; Daniel D McClanahan; Brian K Oberholtzer; Deon B Doxie; Caroline E Roe; Kirsten E Diggins; Nalin Leelatian; Megan L Rasmussen; Mark C Kelley; Vivian Gama; Peter J Siska; Jeffrey C Rathmell; P Brent Ferrell; Douglas B Johnson; Jonathan M Irish
Journal:  Cancer Immunol Res       Date:  2018-11-09       Impact factor: 11.151

4.  Immune stability predicts tuberculosis infection risk in a wild mammal.

Authors:  Mauricio Seguel; Brianna R Beechler; Courtney C Coon; Paul W Snyder; Johannie M Spaan; Anna E Jolles; Vanessa O Ezenwa
Journal:  Proc Biol Sci       Date:  2019-10-02       Impact factor: 5.349

5.  Innate inflammation drives NK cell activation to impair Treg activity.

Authors:  Joseph W Dean; Leeana D Peters; Christopher A Fuhrman; Howard R Seay; Amanda L Posgai; Scott E Stimpson; Maigan A Brusko; Daniel J Perry; Wen-I Yeh; Brittney N Newby; Michael J Haller; Andrew B Muir; Mark A Atkinson; Clayton E Mathews; Todd M Brusko
Journal:  J Autoimmun       Date:  2020-02-06       Impact factor: 7.094

6.  Cytokine Responses to Rhinovirus and Development of Asthma, Allergic Sensitization, and Respiratory Infections during Childhood.

Authors:  Adnan Custovic; Danielle Belgrave; Lijing Lin; Eteri Bakhsoliani; Aurica G Telcian; Roberto Solari; Clare S Murray; Ross P Walton; John Curtin; Michael R Edwards; Angela Simpson; Magnus Rattray; Sebastian L Johnston
Journal:  Am J Respir Crit Care Med       Date:  2018-05-15       Impact factor: 21.405

7.  Gene Expression Signatures Characterized by Longitudinal Stability and Interindividual Variability Delineate Baseline Phenotypic Groups with Distinct Responses to Immune Stimulation.

Authors:  Adam D Scheid; Virginia P Van Keulen; Sara J Felts; Steven C Neier; Sumit Middha; Asha A Nair; Robert W Techentin; Barry K Gilbert; Jin Jen; Claudia Neuhauser; Yuji Zhang; Larry R Pease
Journal:  J Immunol       Date:  2018-01-19       Impact factor: 5.422

Review 8.  Naturalizing mouse models for immunology.

Authors:  Andrea L Graham
Journal:  Nat Immunol       Date:  2021-01-25       Impact factor: 25.606

9.  Adaptation to low parasite abundance affects immune investment and immunopathological responses of cavefish.

Authors:  Robert Peuß; Andrew C Box; Shiyuan Chen; Yongfu Wang; Dai Tsuchiya; Jenna L Persons; Alexander Kenzior; Ernesto Maldonado; Jaya Krishnan; Jörn P Scharsack; Brian D Slaughter; Nicolas Rohner
Journal:  Nat Ecol Evol       Date:  2020-07-20       Impact factor: 15.460

10.  Cell type-specific immune phenotypes predict loss of insulin secretion in new-onset type 1 diabetes.

Authors:  Matthew J Dufort; Carla J Greenbaum; Cate Speake; Peter S Linsley
Journal:  JCI Insight       Date:  2019-02-21
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