| Literature DB >> 28692646 |
Otto Savolainen1, Björn Fagerberg2, Mads Vendelbo Lind1,3, Ann-Sofie Sandberg1, Alastair B Ross1, Göran Bergström4.
Abstract
AIM: The aim was to determine if metabolomics could be used to build a predictive model for type 2 diabetes (T2D) risk that would improve prediction of T2D over current risk markers.Entities:
Mesh:
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Year: 2017 PMID: 28692646 PMCID: PMC5503163 DOI: 10.1371/journal.pone.0177738
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Baseline characteristics of the 64-year-old women.
| No diabetes at follow-up | T2D (n = 202) | New T2D at follow-up (n = 69) | ||
|---|---|---|---|---|
| NGT(n = 188) | IGT(n = 203) | |||
| Family history of T2D, n (%) | 38(19) | 81(40) | 67(33) | 29(42) |
| Smoking, n (%) | ||||
| Never | 79(42) | 89(44) | 91(45) | 24(35) |
| Previous | 73(39) | 77(38) | 64(32) | 30(43) |
| Current | 36(19) | 37(18) | 47(23) | 15(22) |
| Alcohol consumption, g/day | 8.8(8.0) | 7.2(7.1) | 8.3(8.8) | 7.7(8.0) |
| Waist circumference, cm | 88(9) | 92(12) | 97(11) | 95(13) |
| Systolic blood pressure, mm Hg | 136(16) | 149(17) | 151(18) | 148(17) |
| Serum adiponectin, μg/mL | 17.5(7.1) | 14.1(6.7) | 12.5(6.2) | 12.4(6.8) |
| HOMA IR (pmol/L)・(mmol/L) | 1.2(0.6) | 1.8(1.3) | 2.7(1.5) | 2.2(1.4) |
| IGT, n (%) | 48(70) | |||
| IFG, n (%) | 19(28) | |||
All values are mean(+/-standard deviation) if not otherwise stated
Models used for prediction of incidence of type 2 diabetes with abbreviations and variables included in the models.
| Model [ref] | Abbreviation | Variables |
|---|---|---|
| 1: Non-invasive [ | NI | waist circumference, alcohol consumption, smoking, systolic blood pressure, family history of T2D |
| 2: Non-invasive+metabolomics | NIMet | AM + sorbitol, galacticol, mannose, galactose, uric acid, oxalic acid, glucaric acid-1,4-lactone, 3-methyl-2-oxopentanoic acid, 2-hydroxybutyric acid |
| 3: Adiponectin [ | AdM | serum adiponectin, HOMA IR, smoking, IGT, IFG |
| 4: Adiponectin + metabolomics | AdMMet | AdM + sorbitol, galacticol, mannose, galactose, uric acid, oxalic acid, glucaric acid-1,4-lactone, 3-methyl-2-oxopentanoic acid, 2-hydroxybutyric acid |
| 5: Metabolomics model | Met | sorbitol, galacticol, mannose, galactose, uric acid, oxalic acid, glucaric acid-1,4-lactone, 3-methyl-2-oxopentanoic acid, 2-hydroxybutyric acid |
| 6: Optimized metabolomics | OMet | galacticol, mannose, galactose and 2-hydroxybutyric acid |
| 7: Adiponectin without glucose measures | AdM2 | serum adiponectin, HOMA IR, smoking |
| 8: Optimized metabolomics with glucose measures | OMet2 | IFG, IGT, galacticol, mannose, galactose and 2-hydroxybutyric acid |
Metabolites used in prediction of incident T2D with average P-value, false discovery rate (FDR), odds ratio (OR) and 95% confidence interval (95% CI) from the pairwise comparisons of the NGT and IGT groups to the T2D group.
| Metabolite | P-value | FDR | OR | 95% CI |
|---|---|---|---|---|
| Sorbitol | 7.54E-13 | 1.86E-11 | 11.15 | 6.06–22.65 |
| Galacticol | 4.85E-10 | 7.37E-11 | 6.56 | 3.90–11.95 |
| Mannose | 3.72E-08 | 2.66E-08 | 3.89 | 2.52–6.35 |
| Galactose | 9.95E-06 | 4.56E-05 | 2.44 | 1.68–3.69 |
| Uric acid | 1.10E-08 | 5.20E-08 | 3.22 | 2.21–4.89 |
| Oxalic acid | 2.19E-05 | 2.70E-07 | 2.56 | 1.79–3.79 |
| Glucaric acid-1,4-lactone | 8.68E-07 | 3.29E-09 | 3.80 | 2.47–6.16 |
| 3-Methyl-2-oxopentanoic acid | 4.18E-06 | 1.74E-05 | 2.96 | 1.90–4.98 |
| 2-Hydroxybutyric acid | 3.32E-06 | 5.61E-05 | 3.40 | 2.17–5.75 |
AUC values with 95% CI for each model and the % change in AUC where applicable.
| Model | AUC | Change in AUC (%) |
|---|---|---|
| 1: NI | 0.6377 (0.5645–0.7108) | |
| 2: NIMet | 0.6997 (0.6261–0.7733) | +9.7 |
| 3: AdM | 0.7941 (0.7382–0.8500) | |
| 4: AdMMet | 0.8078 (0.7491–0.8666) | +1.7 |
| 5: Met | 0.6566 (0.5771–0.7361) | |
| 6: OMet | 0.6562 (0.5789–0.7335) | -0.1 |
| 7: AdM2 | 0.6550 (0.5800–0.7290) | |
| 8: OMet2 | 0.7760 (0.7130–0.8390) | |
1Change in AUC after addition of metabolomics into the prediction model
2Model 1: Non-invasive, Model 2: Noninvasive + metabolomics, Model 3: Adiponectin, Model 4: Adiponectin + metabolomics, Model 5: Metabolomics, Model 6: Optimized metabolomics, Model 7: Adiponectin without glucose measures and Model 8: Optimized metabolomics with glucose measures
Comparison of the different ROC-prediction models based on known markers of type 2 diabetes risk and those derived using metabolomics.
Numbers are P-values and the ones highlighted in grey are significantly different at P<0.05.
| Model 1 | Model 2 | Model 3 | Model 4 | Model 5 | Model 6 | Model 7 | Model 8 | |
|---|---|---|---|---|---|---|---|---|
| Model 1 | x | 0.2419 | 0.7313 | 0.7330 | 0.7486 | |||
| Model 2 | x | x | 0.4363 | 0.4248 | 0.4007 | 0.1212 | ||
| Model 3 | x | x | x | 0.7406 | 0.0057 | 0.6780 | ||
| Model 4 | x | x | x | x | 0.4729 | |||
| Model 5 | x | x | x | x | x | 0.9764 | 0.9733 | 0.2094 |
| Model 6 | x | x | x | x | x | x | 0.9789 | |
| Model 7 | x | x | x | x | x | x | x | |
| Model 8 | x | x | x | x | x | x | x | x |
Model 1: Non-invasive, Model 2: Noninvasive + metabolomics, Model 3: Adiponectin, Model 4: Adiponectin + metabolomics, Model 5: Metabolomics, Model 6: Optimized metabolomics, Model 7: Adiponectin without glucose measures and Model 8: Optimized metabolomics with glucose measures