| Literature DB >> 28690812 |
Abstract
The amount of variation in species composition among sampling units or beta diversity has become a primary tool for connecting the spatial structure of species assemblages to ecological processes. Many different measures of beta diversity have been developed. Among them, the total variance in the community composition matrix has been proposed as a single-number estimate of beta diversity. In this study, I first show that this measure summarizes the compositional variation among sampling units after nonlinear transformation of species abundances. Therefore, it is not always adequate for estimating beta diversity. Next, I propose an alternative approach for calculating beta diversity in which variance is substituted by a weighted measure of concentration (i.e., an inverse measure of evenness). The relationship between this new measure of beta diversity and so-called multiple-site dissimilarity measures is also discussed.Entities:
Keywords: community composition matrix; dissimilarity measures; evenness; species abundances; total sum of squares; variance decomposition
Year: 2017 PMID: 28690812 PMCID: PMC5496569 DOI: 10.1002/ece3.2980
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Community composition matrix of the belt transect across the beech timberline in Central Italy used in the worked example
| Species | Plot Number | % β | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | ||
|
| 6 | 6 | 6 | 6 | 6 | 7 | 7 | 7 | 6 | 6 | 6 | 2 | 20.066 | |||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1 | 1 | 2.543 | ||||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 2.911 | |||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 2.911 | |||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 3.175 | ||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 1 | 3.355 | |||||||||||||||||
|
| 1 | 1 | 1 | 2.543 | ||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 1 | 3.355 | |||||||||||||||||
|
| 1 | 1 | 1 | 2.543 | ||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 4 | 4 | 4 | 4 | 3 | 3 | 5 | 5 | 3 | 5 | 12.865 | |||||||||||
|
| 1 | 1 | 1 | 1 | 2.911 | |||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3.465 | ||||||||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3.514 | ||||||||||||||
|
| 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3.515 | |||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 1 | 2.543 | ||||||||||||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 2.033 | |||||||||||||||||||||
|
| 1 | 1.305 | ||||||||||||||||||||||
|
| 1 | 1 | 1 | 2.543 | ||||||||||||||||||||
Columns are adjacent plots, and rows are species. The species abundances are a visual estimate of the species cover on a 10% interval scale. The last column shows the percent contribution of single species to overall beta diversity of the whole transect.
Figure 1Dendrogram of the constrained cluster analysis of the belt transect used in the worked example. The clustering algorithm is based on the Chord distance calculated from the species abundance values in Table 1. For each node, the corresponding beta diversity value is shown
| P1 | P2 | P3 | P4 | |
|---|---|---|---|---|
| S1 | 1 | 0 | 0 | 0 |
| S2 | 0 | 1 | 0 | 0 |
| S3 | 0 | 0 | 1 | 0 |
| S4 | 0 | 0 | 0 | 1 |
| P1 | P2 | P3 | P4 | |
|---|---|---|---|---|
| S1 | 1 | 1 | 0 | 0 |
| S2 | 0 | 1 | 1 | 0 |
| S3 | 0 | 0 | 1 | 1 |
| S4 | 1 | 0 | 0 | 1 |
| P1 | P2 | P3 | P4 | |
|---|---|---|---|---|
| S1 | 1 | 1 | 1 | 0 |
| S2 | 0 | 1 | 1 | 1 |
| S3 | 1 | 0 | 1 | 1 |
| S4 | 1 | 1 | 0 | 1 |
| P1 | P2 | P3 | P4 | |
|---|---|---|---|---|
| S1 | 10 | 10 | 10 | 0 |
| S2 | 0 | 10 | 10 | 0 |
| S3 | 0 | 0 | 10 | 0 |
| S4 | 0 | 0 | 0 | 10 |
| P1 | P2 | P3 | P4 | |
|---|---|---|---|---|
| S1 | 1 | 0.71 | 0.58 | 0 |
| S2 | 0 | 0.71 | 0.58 | 0 |
| S3 | 0 | 0 | 0.58 | 0 |
| S4 | 0 | 0 | 0 | 1 |