| Literature DB >> 28689814 |
Yun-Hee Song1, Kyung-Tai Lee2, Jin-Young Baek1, Min-Ju Kim1, Mi-Ra Kwon2, Young-Joo Kim2, Mi-Rim Park2, Haesu Ko2, Jin-Sung Lee3, Keun-Sung Kim4.
Abstract
The various types of lignocellulosic biomass found in plants comprise the most abundant renewable bioresources on Earth. In this study, the ruminal microbial ecosystem of black goats was explored because of their strong ability to digest lignocellulosic forage. A metagenomic fosmid library containing 115,200 clones was prepared from the black-goat rumen and screened for a novel cellulolytic enzyme. The KG35 gene, containing a novel glycosyl hydrolase family 5 cellulase domain, was isolated and functionally characterized. The novel glycosyl hydrolase family 5 cellulase gene is composed of a 963-bp open reading frame encoding a protein of 320 amino acid residues (35.1kDa). The deduced amino acid sequence showed the highest sequence identity (58%) for sequences from the glycosyl hydrolase family 5 cellulases. The novel glycosyl hydrolase family 5 cellulase gene was overexpressed in Escherichia coli. Substrate specificity analysis revealed that this recombinant glycosyl hydrolase family 5 cellulase functions as an endo-β-1,4-glucanase. The recombinant KG35 endo-β-1,4-glucanase showed optimal activity within the range of 30-50°C at a pH of 6-7. The thermostability was retained and the pH was stable in the range of 30-50°C at a pH of 5-7.Entities:
Keywords: Black goats; Endo-β-1,4-glucanase; Glycosyl hydrolase family 5 (GH5); Metagenomic library; Rumen
Mesh:
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Year: 2017 PMID: 28689814 PMCID: PMC5628298 DOI: 10.1016/j.bjm.2017.03.006
Source DB: PubMed Journal: Braz J Microbiol ISSN: 1517-8382 Impact factor: 2.476
Fig. 1Multiple alignment of the KG35 endo-β-1,4-glucanase GH5 domain with other homologous GH5 protein domains. The deduced amino acid sequence of a GH5 family domain in KG35 endo-β-1,4-glucanase was aligned with those of selected homologous enzymes from the following microorganisms: Eubacterium cellulosolvens (WP_051527028.1); Agathobacter rectalis (WP_055222932.1); Roseburia inulinivorans (WP_055169535.1); A. rectalis (WP_012741522.1); Ruminococcus torques (WP_055163516.1); Eubacterium rectale CAG:36 (CDC71888.1); R. inulinivorans (WP_055040325.1); and Lachnospiraceae bacterium C6A11 (WP_051646390.1). Signature sequences of GH5 domains are shaded in gray. The Glu residues under the star symbols indicate the catalytic sites.
Amino acid sequence identity between the novel KG35 endo-β-1,4-glucanase and other (Homologous) proteins.
| Protein name | GeneBank accession number | Query coverage (%) | Identity (%) |
|---|---|---|---|
| Hypothetical protein | WP_051527028.1 | 98 | 58 |
| Glycosyl hydrolase family 5 protein | WP_055222932.1 | 98 | 52 |
| Glycosyl hydrolase family 5 protein | WP_055169535.1 | 98 | 51 |
| Endo-1,4-β-glucanase | WP_012741522.1 | 98 | 51 |
| Glycosyl hydrolase family 5 protein | WP_055163516.1 | 98 | 51 |
| Endoglucanase | CDC71888.1 | 98 | 51 |
| Glycosyl hydrolase family 5 protein | WP_055040325.1 | 98 | 50 |
| Hypothetical protein | WP_051646390.1 | 98 | 50 |
The novel KG35 endo-β-1,4-glucanase gene was used for BlastP searches using the 98% query coverage cutoff value and 50% identity cutoff value.
Fig. 2SDS-PAGE analyses of recombinant KG35 endo-β-1,4-glucanase produced in E. coli Rosetta-gami™. Lane M: protein molecular weight markers; lane 1: total cell-free extracts before induction; lane 2: the soluble fraction after the induction; lane 3: purified KG35 endo-β-1,4-glucanase; lane 4: zymogram analysis of KG35 endo-β-1,4-glucanase.
Substrate specificity of the novel KG35 endo-β-1,4-glucanase toward various substrates.
| Substrate | Main linkage types | Specific activity (U/mg) |
|---|---|---|
| Carboxylmethylcellulose (CMC) | β-1,4-Glucan | 8.40 ± 0.03 |
| Barley glucan | β-1,3/1,4-Glucan | 5.40 ± 0.19 |
| β-1,4-Glucan | 0.51 ± 0.01 | |
| Laminarin | β-1,3/1,6-Glucan | 0.48 ± 0.04 |
| Avicel | β-1,4-Glucan | 0.12 ± 0.02 |
| Xylan from birchwood | β-1,4-Xylan | 0.00 ± 0.00 |
| β-Mannan | β-1,4-Mannan | 0.00 ± 0.00 |
| β-1,4-Glucan | 0.00 ± 0.00 |
Fig. 3Effects of pH and temperature on the activity of recombinant KG35 endo-β-1,4-glucanase. (A) The optimal enzyme activity was measured at a pH range of 4–10. The buffers were 0.1 M sodium acetate (pH 4–6, ●), 0.1 M sodium phosphate (pH 6–8, ○), 0.1 M Tris–HCl (pH 8–9, ▾), and 0.1 M glycine–NaOH (pH 9–10, ▵). (B) The optimal enzyme activity was measured at a temperature range of 20–70 °C. The error bars represent the standard deviation of triplicate measurements.
Fig. 4Effects of pH and temperature on the stability of the recombinant KG35 endo-β-1,4-glucanase. (A) The pH stability as determined by measuring the residual activity after the enzyme was preincubated at 4 °C for 24 h at the indicated pH levels from 4 to 10. The buffers were 0.1 M sodium acetate (pH 4–6, ●), 0.1 M sodium phosphate (pH 6–8, ○), 0.1 M Tris–HCl (pH 8–9, ▾), and 0.1 M glycine–NaOH (pH 9–10, ▵). (B) The temperature stability as determined by measuring the residual activity after the enzyme was pre-incubated at pH 7 for 1 h over the temperature range of 20–70 °C. The error bars represent the standard deviation of triplicate measurements.