Literature DB >> 26901403

Functional metagenomics of extreme environments.

Salvador Mirete1, Verónica Morgante1, José Eduardo González-Pastor2.   

Abstract

The bioprospecting of enzymes that operate under extreme conditions is of particular interest for many biotechnological and industrial processes. Nevertheless, there is a considerable limitation to retrieve novel enzymes as only a small fraction of microorganisms derived from extreme environments can be cultured under standard laboratory conditions. Functional metagenomics has the advantage of not requiring the cultivation of microorganisms or previous sequence information to known genes, thus representing a valuable approach for mining enzymes with new features. In this review, we summarize studies showing how functional metagenomics was employed to retrieve genes encoding for proteins involved not only in molecular adaptation and resistance to extreme environmental conditions but also in other enzymatic activities of biotechnological interest.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2016        PMID: 26901403     DOI: 10.1016/j.copbio.2016.01.017

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  19 in total

1.  Analysis of Bacterial Communities by 16S rRNA Gene Sequencing in a Melon-Producing Agro-environment.

Authors:  Eduardo Franco-Frías; Victor Mercado-Guajardo; Angel Merino-Mascorro; Janeth Pérez-Garza; Norma Heredia; Juan S León; Lee-Ann Jaykus; Jorge Dávila-Aviña; Santos García
Journal:  Microb Ecol       Date:  2021-02-11       Impact factor: 4.552

2.  Diversity and Distribution of Thermophilic Bacteria in Hot Springs of Pakistan.

Authors:  Arshia Amin; Iftikhar Ahmed; Nimaichand Salam; Byung-Yong Kim; Dharmesh Singh; Xiao-Yang Zhi; Min Xiao; Wen-Jun Li
Journal:  Microb Ecol       Date:  2017-01-19       Impact factor: 4.552

Review 3.  Prospects of advanced metagenomics and meta-omics in the investigation of phytomicrobiome to forecast beneficial and pathogenic response.

Authors:  Atif Khurshid Wani; Nahid Akhtar; Reena Singh; Chirag Chopra; Prachi Kakade; Mahesh Borde; Jameel M Al-Khayri; Penna Suprasanna; Saurabha B Zimare
Journal:  Mol Biol Rep       Date:  2022-09-28       Impact factor: 2.742

Review 4.  Strategies for Natural Products Discovery from Uncultured Microorganisms.

Authors:  Khorshed Alam; Muhammad Nazeer Abbasi; Jinfang Hao; Youming Zhang; Aiying Li
Journal:  Molecules       Date:  2021-05-17       Impact factor: 4.411

5.  Exobiology of the Venusian Clouds: New Insights into Habitability through Terrestrial Models and Methods of Detection.

Authors:  Oleg R Kotsyurbenko; Jaime A Cordova; Andrey A Belov; Vladimir S Cheptsov; Denise Kölbl; Yuliya Y Khrunyk; Margarita O Kryuchkova; Tetyana Milojevic; Rakesh Mogul; Satoshi Sasaki; Grzegorz P Słowik; Valery Snytnikov; Elena A Vorobyova
Journal:  Astrobiology       Date:  2021-07-13       Impact factor: 4.045

Review 6.  Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes.

Authors:  María-Eugenia DeCastro; Esther Rodríguez-Belmonte; María-Isabel González-Siso
Journal:  Front Microbiol       Date:  2016-09-27       Impact factor: 5.640

7.  Combined Whole-Cell High-Throughput Functional Screening for Identification of New Nicotinamidases/Pyrazinamidases in Metagenomic/Polygenomic Libraries.

Authors:  Rubén Zapata-Pérez; Antonio G García-Saura; Mohamed Jebbar; Peter N Golyshin; Álvaro Sánchez-Ferrer
Journal:  Front Microbiol       Date:  2016-11-29       Impact factor: 5.640

8.  Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments.

Authors:  Rituja Saxena; Darshan B Dhakan; Parul Mittal; Prashant Waiker; Anirban Chowdhury; Arundhuti Ghatak; Vineet K Sharma
Journal:  Front Microbiol       Date:  2017-01-05       Impact factor: 5.640

9.  Draft genome sequence of Exiguobacterium aurantiacum strain PN47 isolate from saline ponds, known as "Salar del Huasco", located in the Altiplano in the North of Chile.

Authors:  Erwin Strahsburger; Felipe Zapata; Inti Pedroso; Derie Fuentes; Paz Tapia; Raul Ponce; Jorge Valdes
Journal:  Braz J Microbiol       Date:  2017-07-18       Impact factor: 2.476

10.  Isolation and characterization of a novel endo-β-1,4-glucanase from a metagenomic library of the black-goat rumen.

Authors:  Yun-Hee Song; Kyung-Tai Lee; Jin-Young Baek; Min-Ju Kim; Mi-Ra Kwon; Young-Joo Kim; Mi-Rim Park; Haesu Ko; Jin-Sung Lee; Keun-Sung Kim
Journal:  Braz J Microbiol       Date:  2017-06-26       Impact factor: 2.476

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