| Literature DB >> 28687079 |
Xiaofei Zhu1, Kui Zhai2, Yue Mi3, Guangju Ji4.
Abstract
BACKGROUND: It has been shown that hosphodiesterases (PDEs) play an important role in mediating the smooth muscle tone of rat urinary bladder. However, the gene expression profiles of them were still unknown.Entities:
Keywords: Gene expression; Phasic contraction; Phosphodiesterases; Rat urinary bladder
Mesh:
Substances:
Year: 2017 PMID: 28687079 PMCID: PMC5501575 DOI: 10.1186/s12894-017-0244-0
Source DB: PubMed Journal: BMC Urol ISSN: 1471-2490 Impact factor: 2.264
The primer sequences of PDE isoforms
| Name | Sequences |
|---|---|
| PDE1A (Forward, F) | 5′CCACTTTGTGATCGGAAGTC3′ |
| PDE1A (Reverse, R) | 5′TTCTGCTGAATGATGTCCACC3′ |
| PDE1B (F) | 5′CAGGGTGACAAGGAGGCAGAG3′ |
| PDE1B (R) | 5′GACATCTGGTTGGTGATGCC3′ |
| PDE1C (F) | 5′TCTCAAAGGATGACTGGAGG3′ |
| PDE1C (R) | 5′GCTTCTCTGTCACCCTGTC3′ |
| PDE2A (F) | 5′CCTCCTGTGACCTCTCTGACC3′ |
| PDE2A (R) | 5′TGAACTTGTGGGACACCTTGG3′ |
| PDE3A (F) | 5′TCACAGGGCCTTAACTTACAC3′ |
| PDE3A (R) | 5′GGAGCAAGAATTGGTTTGTCC3′ |
| PDE3B (F) | 5′CCTCAGGCAGTTTTATACAATG3′ |
| PDE3B (R) | 5′TGCTTCTTCATCTCCCTGCTC3′ |
| PDE4A (F) | 5′GTGGAGAAGTCTCAGGTGGG3′ |
| PDE4A (R) | 5′TGGAACTTGTCAGGCAGGG3′ |
| PDE4B (F) | 5′TAGAAGATAACAGGAACTGG3′ |
| PDE4B (R) | 5′GCAATGTCTATGTCAGTCTC3′ |
| PDE4C (F) | 5′ACGTGGCGTACCACAACAGC3′ |
| PDE4C (R) | 5′TACCGCGAGGTGATGGTTCTC3′ |
| PDE4D (F) | 5′GGATAATGGAGGAGTTCTTCC3′ |
| PDE4D (R) | 5′CGATTGTCCTCCAAAGTGTCC3′ |
| PDE5A (F) | 5′CCCTGGCCTATTCAACAACGG3′ |
| PDE5A (R) | 5′GTGGGTCAGGGCCTCATACAG3′ |
| PDE7A (F) | 5′TGGACAAGCCAAGTGTATGCTG3′ |
| PDE7A (R) | 5′TTTAAGTAACAGTGCATGGCC3′ |
| PDE7B (F) | 5′AAAGCCCAGTGGAAGAGC3′ |
| PDE7B (R) | 5′CGAAGGGAGGTGGTAAATG3′ |
| PDE8A (F) | 5′CAACAAGCCTCTGAAAGC3′ |
| PDE8A (R) | 5′TCGGTCTGGGAGAAATAC3′ |
| PDE8B (F) | 5′ACCACAACTCCACCCATG3′ |
| PDE8B (R) | 5′AGAGGCTTGTTGATGCTG3′ |
| PDE9A (F) | 5′TGGGTGGACTGTTTACTGG3′ |
| PDE9A (R) | 5′CGGTCTTCATTGTCTTTCG3′ |
| PDE10A (F) | 5′TGCTTGGTGGCGTTTGTTAG3′ |
| PDE10A (R) | 5′TTCTCTGATGCCTGGGATGTAC3′ |
| PDE11A (F) | 5′TTTAGCGGTGATTGTGGG3′ |
| PDE11A (R) | 5′TCTCGAAGTACAGCGTGAGG3′ |
| GAPDH (F) | 5′CAAGTTCAACGGCACAGTCAAG3′ |
| GAPDH (R) | 5′GCACCAGTGGATGCAGGGAT3′ |
Fig. 1Expression of the mRNA for different PDE isoforms in adult rat urinary bladder. RT-PCR was performed on mRNA extracted from the whole bladder tissues in the presence of primers for PDE1A, PDE1B, PDE1C, PDE2A, PDE3A, PDE3B, PDE4A, PDE4B, PDE4C, PDE4D, PDE5A, PDE7A, PDE7B, PDE8A, PDE8B, PDE9A, PDE10A, PDE11A, and GAPDH. PCR products were resolved by electrophoresis on a 1.7% agarose gel. The representative gels stained with ethidium bromide was shown. Position of molecular weight markers is indicated in base pairs (Bp)
The expression levels of PDE isoforms in adult rat urinary bladder
| PDE | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1A | 1B | 1C | 2A | 3A | 3B | 4A | 4B | 4C | 4D | 5A | 7A | 7B | 8A | 8B | 9A | 10A | 11A | |
| 1 | + | ˗ | ˗ | ++ | ˗ | + | ++ | ++ | ˗ | ++ | +++ | + | + | ˗ | + | +++ | +++ | ˗ |
| 2 | + | ˗ | ˗ | ++ | - | + | ++ | ++ | ˗ | ++ | +++ | + | + | ˗ | + | +++ | +++ | ˗ |
| 3 | + | ˗ | ˗ | ++ | - | + | ++ | ++ | ˗ | ++ | +++ | + | + | ˗ | + | +++ | +++ | ˗ |
+++ indicates high expression; ++ indicates medium expression; + indicates low expression; − indicates no detection
Fig. 2PDE3A expression was determined by qRT-PCR and western blotting in neonatal and adult rat urinary bladder, respectively. a Summary data of qRT-PCR from neonatal (N = 3) and adult (N = 3) rat bladder. b-c The representative blots and the summary data of these blots are shown. Position of molecular weight markers is indicated in kDa. Data are Mean ± SEM of N independent rat bladders. *P < 0.05 and **P < 0.01 are neonatal versus adult
Fig. 3PDE3B expression was determined by RT-PCR and western blotting in neonatal and adult rat urinary bladder, respectively. a The representative gels and summary data of RT-PCR were shown. b The representative blots and summary data of western blotting were shown. Position of molecular weight markers is indicated in Bp or kDa, respectively. Data are Mean ± SEM of N independent rat bladders as indicated in brackets
Fig. 4Effects of Cil on the carbachol-enhanced phasic contractions of neonatal and adult rat urinary bladder strips. a Original traces of carbachol-enhanced phasic contractions in neonatal rat bladder strips before and after the application of DMSO (<0.1%) and the PDE3 inhibitor Cil (1 μM). b Original traces of carbachol-enhanced phasic contractions in adult rat bladder strips before and after the application of DMSO (<0.1%) and the PDE3 inhibitor Cil (1 μM).The arrows indicate the times of drugs application. c Summary data showing the average effect of DMSO (vehicle) and Cil on the carbachol-enhanced phasic contractions amplitude and frequency. Data are expressed as mean ± SEM of n independent bladder strips as indicated in brackets. *P < 0.05 **P < 0.01 and ***P < 0.001 as indicated