Literature DB >> 28686513

Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients.

Charles Langelier1, Matt S Zinter1, Katrina Kalantar1, Gregory A Yanik2, Stephanie Christenson1, Brian O'Donovan1, Corin White1, Michael Wilson1, Anil Sapru1, Christopher C Dvorak1, Steve Miller1, Charles Y Chiu1, Joseph L DeRisi1,3.   

Abstract

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Year:  2018        PMID： 28686513      PMCID： PMC5821905          DOI： 10.1164/rccm.201706-1097LE

Source DB:  PubMed          Journal:  Am J Respir Crit Care Med        ISSN： 1073-449X            Impact factor:   21.405


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  9 in total

1.  Guidelines for preventing infectious complications among hematopoietic cell transplant recipients: a global perspective.

Authors: 
Journal:  Bone Marrow Transplant       Date:  2009-10       Impact factor: 5.483

2.  Community-Acquired Pneumonia Requiring Hospitalization among U.S. Adults.

Authors:  Seema Jain; Wesley H Self; Richard G Wunderink; Sherene Fakhran; Robert Balk; Anna M Bramley; Carrie Reed; Carlos G Grijalva; Evan J Anderson; D Mark Courtney; James D Chappell; Chao Qi; Eric M Hart; Frank Carroll; Christopher Trabue; Helen K Donnelly; Derek J Williams; Yuwei Zhu; Sandra R Arnold; Krow Ampofo; Grant W Waterer; Min Levine; Stephen Lindstrom; Jonas M Winchell; Jacqueline M Katz; Dean Erdman; Eileen Schneider; Lauri A Hicks; Jonathan A McCullers; Andrew T Pavia; Kathryn M Edwards; Lyn Finelli
Journal:  N Engl J Med       Date:  2015-07-14       Impact factor: 91.245

3.  Non-diphtheriae Corynebacterium species: an emerging respiratory pathogen.

Authors:  M Díez-Aguilar; P Ruiz-Garbajosa; A Fernández-Olmos; P Guisado; R Del Campo; C Quereda; R Cantón; M A Meseguer
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2012-12-28       Impact factor: 3.267

4.  Sinus microbiome diversity depletion and Corynebacterium tuberculostearicum enrichment mediates rhinosinusitis.

Authors:  Nicole A Abreu; Nabeetha A Nagalingam; Yuanlin Song; Frederick C Roediger; Steven D Pletcher; Andrew N Goldberg; Susan V Lynch
Journal:  Sci Transl Med       Date:  2012-09-12       Impact factor: 17.956

5.  Infections caused by viridans streptococci in patients with neutropenia.

Authors:  Allan R Tunkel; Kent A Sepkowitz
Journal:  Clin Infect Dis       Date:  2002-05-06       Impact factor: 9.079

6.  Rhinovirus Detection in Symptomatic and Asymptomatic Children: Value of Host Transcriptome Analysis.

Authors:  Santtu Heinonen; Tuomas Jartti; Carla Garcia; Silvia Oliva; Cynthia Smitherman; Esperanza Anguiano; Wouter A A de Steenhuijsen Piters; Tytti Vuorinen; Olli Ruuskanen; Blerta Dimo; Nicolas M Suarez; Virginia Pascual; Octavio Ramilo; Asuncion Mejias
Journal:  Am J Respir Crit Care Med       Date:  2016-04-01       Impact factor: 21.405

7.  The Molecular Signatures Database (MSigDB) hallmark gene set collection.

Authors:  Arthur Liberzon; Chet Birger; Helga Thorvaldsdóttir; Mahmoud Ghandi; Jill P Mesirov; Pablo Tamayo
Journal:  Cell Syst       Date:  2015-12-23       Impact factor: 10.304

8.  Actionable diagnosis of neuroleptospirosis by next-generation sequencing.

Authors:  Michael R Wilson; Samia N Naccache; Erik Samayoa; Mark Biagtan; Hiba Bashir; Guixia Yu; Shahriar M Salamat; Sneha Somasekar; Scot Federman; Steve Miller; Robert Sokolic; Elizabeth Garabedian; Fabio Candotti; Rebecca H Buckley; Kurt D Reed; Teresa L Meyer; Christine M Seroogy; Renee Galloway; Sheryl L Henderson; James E Gern; Joseph L DeRisi; Charles Y Chiu
Journal:  N Engl J Med       Date:  2014-06-04       Impact factor: 91.245

9.  Illuminating uveitis: metagenomic deep sequencing identifies common and rare pathogens.

Authors:  Thuy Doan; Michael R Wilson; Emily D Crawford; Eric D Chow; Lillian M Khan; Kristeene A Knopp; Brian D O'Donovan; Dongxiang Xia; Jill K Hacker; Jay M Stewart; John A Gonzales; Nisha R Acharya; Joseph L DeRisi
Journal:  Genome Med       Date:  2016-08-25       Impact factor: 11.117
  9 in total
  64 in total

1.  Rethinking pneumonia: A paradigm shift with practical utility.

Authors:  Rishi Chanderraj; Robert P Dickson
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-07       Impact factor: 11.205

2.  Evaluation of the CosmosID Bioinformatics Platform for Prosthetic Joint-Associated Sonicate Fluid Shotgun Metagenomic Data Analysis.

Authors:  Qun Yan; Yu Mi Wi; Matthew J Thoendel; Yash S Raval; Kerryl E Greenwood-Quaintance; Matthew P Abdel; Patricio R Jeraldo; Nicholas Chia; Robin Patel
Journal:  J Clin Microbiol       Date:  2019-01-30       Impact factor: 5.948

3.  Direct Detection and Identification of Prosthetic Joint Infection Pathogens in Synovial Fluid by Metagenomic Shotgun Sequencing.

Authors:  Morgan I Ivy; Matthew J Thoendel; Patricio R Jeraldo; Kerryl E Greenwood-Quaintance; Arlen D Hanssen; Matthew P Abdel; Nicholas Chia; Janet Z Yao; Aaron J Tande; Jayawant N Mandrekar; Robin Patel
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

Review 4.  From the Pipeline to the Bedside: Advances and Challenges in Clinical Metagenomics.

Authors:  Augusto Dulanto Chiang; John P Dekker
Journal:  J Infect Dis       Date:  2020-03-28       Impact factor: 5.226

Review 5.  Molecular Diagnostic Advances in Transplant Infectious Diseases.

Authors:  Brittany A Young; Kimberly E Hanson; Carlos A Gomez
Journal:  Curr Infect Dis Rep       Date:  2019-11-26       Impact factor: 3.725

Review 6.  A review of methods and databases for metagenomic classification and assembly.

Authors:  Florian P Breitwieser; Jennifer Lu; Steven L Salzberg
Journal:  Brief Bioinform       Date:  2019-07-19       Impact factor: 11.622

7.  Comparison of Three Commercial Tools for Metagenomic Shotgun Sequencing Analysis.

Authors:  Matthew Thoendel; Patricio Jeraldo; Kerryl E Greenwood-Quaintance; Janet Yao; Nicholas Chia; Arlen D Hanssen; Matthew P Abdel; Robin Patel
Journal:  J Clin Microbiol       Date:  2020-02-24       Impact factor: 5.948

8.  Detection of Pneumonia Pathogens from Plasma Cell-Free DNA.

Authors:  Charles Langelier; Monica Fung; Saharai Caldera; Thomas Deiss; Amy Lyden; Brian C Prince; Paula Hayakawa Serpa; Farzad Moazed; Peter Chin-Hong; Joseph L DeRisi; Carolyn S Calfee
Journal:  Am J Respir Crit Care Med       Date:  2020-02-15       Impact factor: 21.405

Review 9.  Rationalizing antimicrobial therapy in the ICU: a narrative review.

Authors:  Jean-François Timsit; Matteo Bassetti; Olaf Cremer; George Daikos; Jan de Waele; Andre Kallil; Eric Kipnis; Marin Kollef; Kevin Laupland; Jose-Artur Paiva; Jesús Rodríguez-Baño; Étienne Ruppé; Jorge Salluh; Fabio Silvio Taccone; Emmanuel Weiss; François Barbier
Journal:  Intensive Care Med       Date:  2019-01-18       Impact factor: 17.440

Review 10.  Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.

Authors:  Wei Gu; Steve Miller; Charles Y Chiu
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472
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