Literature DB >> 24896819

Actionable diagnosis of neuroleptospirosis by next-generation sequencing.

Michael R Wilson1, Samia N Naccache, Erik Samayoa, Mark Biagtan, Hiba Bashir, Guixia Yu, Shahriar M Salamat, Sneha Somasekar, Scot Federman, Steve Miller, Robert Sokolic, Elizabeth Garabedian, Fabio Candotti, Rebecca H Buckley, Kurt D Reed, Teresa L Meyer, Christine M Seroogy, Renee Galloway, Sheryl L Henderson, James E Gern, Joseph L DeRisi, Charles Y Chiu.   

Abstract

A 14-year-old boy with severe combined immunodeficiency presented three times to a medical facility over a period of 4 months with fever and headache that progressed to hydrocephalus and status epilepticus necessitating a medically induced coma. Diagnostic workup including brain biopsy was unrevealing. Unbiased next-generation sequencing of the cerebrospinal fluid identified 475 of 3,063,784 sequence reads (0.016%) corresponding to leptospira infection. Clinical assays for leptospirosis were negative. Targeted antimicrobial agents were administered, and the patient was discharged home 32 days later with a status close to his premorbid condition. Polymerase-chain-reaction (PCR) and serologic testing at the Centers for Disease Control and Prevention (CDC) subsequently confirmed evidence of Leptospira santarosai infection.

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Year:  2014        PMID: 24896819      PMCID: PMC4134948          DOI: 10.1056/NEJMoa1401268

Source DB:  PubMed          Journal:  N Engl J Med        ISSN: 0028-4793            Impact factor:   91.245


  38 in total

Review 1.  Challenge of the unknown. A systematic review of acute encephalitis in non-outbreak situations.

Authors:  J Granerod; C C Tam; N S Crowcroft; N W S Davies; M Borchert; S L Thomas
Journal:  Neurology       Date:  2010-09-07       Impact factor: 9.910

2.  Chronic Meningitis in Weil's Disease.

Authors:  F Murgatroyd
Journal:  Br Med J       Date:  1937-01-02

3.  Demographic and clinical features of leptospirosis: three-year experience in central Taiwan.

Authors:  Po-Chang Lin; Chih-Yu Chi; Mao-Wang Ho; Chin-Ming Chen; Cheng-Mao Ho; Jen-Hsein Wang
Journal:  J Microbiol Immunol Infect       Date:  2008-04       Impact factor: 4.399

4.  Neuroleptospirosis - revisited: experience from a tertiary care neurological centre from south India.

Authors:  Thomas Mathew; P Satishchandra; A Mahadevan; S Nagarathna; T C Yasha; A Chandramukhi; D K Subbakrishna; S K Shankar
Journal:  Indian J Med Res       Date:  2006-08       Impact factor: 2.375

5.  Sporadic urban leptospirosis.

Authors:  J M Vinetz; G E Glass; C E Flexner; P Mueller; D C Kaslow
Journal:  Ann Intern Med       Date:  1996-11-15       Impact factor: 25.391

Review 6.  Ocular manifestations of leptospirosis.

Authors:  S R Rathinam
Journal:  J Postgrad Med       Date:  2005 Jul-Sep       Impact factor: 1.476

Review 7.  How I treat ADA deficiency.

Authors:  H Bobby Gaspar; Alessandro Aiuti; Fulvio Porta; Fabio Candotti; Michael S Hershfield; Luigi D Notarangelo
Journal:  Blood       Date:  2009-07-28       Impact factor: 22.113

8.  A new arenavirus in a cluster of fatal transplant-associated diseases.

Authors:  Gustavo Palacios; Julian Druce; Lei Du; Thomas Tran; Chris Birch; Thomas Briese; Sean Conlan; Phenix-Lan Quan; Jeffrey Hui; John Marshall; Jan Fredrik Simons; Michael Egholm; Christopher D Paddock; Wun-Ju Shieh; Cynthia S Goldsmith; Sherif R Zaki; Mike Catton; W Ian Lipkin
Journal:  N Engl J Med       Date:  2008-02-06       Impact factor: 91.245

9.  A disconnect between the neurospirochetoses in humans and rodent models of disease.

Authors:  Juan C Garcia-Monco; Jorge L Benach
Journal:  PLoS Pathog       Date:  2013-04-11       Impact factor: 6.823

10.  'Leptorapide' - a one-step assay for rapid diagnosis of human leptospirosis.

Authors:  T Brownlow; O V Kavanagh; E F Logan; R A Hartskeerl; R Savage; M F Palmer; M Krahl; D P Mackie; W A Ellis
Journal:  Epidemiol Infect       Date:  2013-09-19       Impact factor: 4.434

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  288 in total

1.  Unbiased Detection of Respiratory Viruses by Use of RNA Sequencing-Based Metagenomics: a Systematic Comparison to a Commercial PCR Panel.

Authors:  Erin H Graf; Keith E Simmon; Keith D Tardif; Weston Hymas; Steven Flygare; Karen Eilbeck; Mark Yandell; Robert Schlaberg
Journal:  J Clin Microbiol       Date:  2016-01-27       Impact factor: 5.948

2.  A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study.

Authors:  Alexander L Greninger; Samia N Naccache; Kevin Messacar; Anna Clayton; Guixia Yu; Sneha Somasekar; Scot Federman; Doug Stryke; Christopher Anderson; Shigeo Yagi; Sharon Messenger; Debra Wadford; Dongxiang Xia; James P Watt; Keith Van Haren; Samuel R Dominguez; Carol Glaser; Grace Aldrovandi; Charles Y Chiu
Journal:  Lancet Infect Dis       Date:  2015-03-31       Impact factor: 25.071

3.  Lowering the Barriers to Routine Whole-Genome Sequencing of Bacteria in the Clinical Microbiology Laboratory.

Authors:  Daniel D Rhoads
Journal:  J Clin Microbiol       Date:  2018-08-27       Impact factor: 5.948

4.  A Guide to Utilization of the Microbiology Laboratory for Diagnosis of Infectious Diseases: 2018 Update by the Infectious Diseases Society of America and the American Society for Microbiology.

Authors:  J Michael Miller; Matthew J Binnicker; Sheldon Campbell; Karen C Carroll; Kimberle C Chapin; Peter H Gilligan; Mark D Gonzalez; Robert C Jerris; Sue C Kehl; Robin Patel; Bobbi S Pritt; Sandra S Richter; Barbara Robinson-Dunn; Joseph D Schwartzman; James W Snyder; Sam Telford; Elitza S Theel; Richard B Thomson; Melvin P Weinstein; Joseph D Yao
Journal:  Clin Infect Dis       Date:  2018-08-31       Impact factor: 9.079

5.  Molecular diagnosis of opportunistic pericardial infection in a patient treated with adalimumab: the role of next-generation sequencing.

Authors:  Stefano Poli; Manola Comar; Roberto Luzzati; Gianfranco Sinagra
Journal:  BMJ Case Rep       Date:  2016-08-29

6.  Emerging Diagnostic and Therapeutic Tools for Central Nervous System Infections.

Authors:  Michael Wilson; Kenneth L Tyler
Journal:  JAMA Neurol       Date:  2016-12-01       Impact factor: 18.302

7.  Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies.

Authors:  Sachiko Seo; Christian Renaud; Jane M Kuypers; Charles Y Chiu; Meei-Li Huang; Erik Samayoa; Hu Xie; Guixia Yu; Cynthia E Fisher; Ted A Gooley; Steven Miller; Robert C Hackman; David Myerson; Ruth H Sedlak; Yae-Jean Kim; Takahiro Fukuda; David N Fredricks; David K Madtes; Keith R Jerome; Michael Boeckh
Journal:  Blood       Date:  2015-04-27       Impact factor: 22.113

8.  Retrospective Review of Clinical Utility of Shotgun Metagenomic Sequencing Testing of Cerebrospinal Fluid from a U.S. Tertiary Care Medical Center.

Authors:  Kyle G Rodino; Michel Toledano; Andrew P Norgan; Bobbi S Pritt; Matthew J Binnicker; Joseph D Yao; Allen J Aksamit; Robin Patel
Journal:  J Clin Microbiol       Date:  2020-11-18       Impact factor: 5.948

Review 9.  Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection.

Authors:  Wei Gu; Steve Miller; Charles Y Chiu
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472

Review 10.  Toward Accurate and Quantitative Comparative Metagenomics.

Authors:  Stephen Nayfach; Katherine S Pollard
Journal:  Cell       Date:  2016-08-25       Impact factor: 41.582

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