Literature DB >> 28678423

How Osmolytes Counteract Pressure Denaturation on a Molecular Scale.

Seishi Shimizu1, Paul E Smith2.   

Abstract

Life in the deep sea exposes enzymes to high hydrostatic pressure, which decreases their stability. For survival, deep sea organisms tend to accumulate various osmolytes, most notably trimethylamine N-oxide used by fish, to counteract pressure denaturation. However, exactly how these osmolytes work remains unclear. Here, a rigorous statistical thermodynamics approach is used to clarify the mechanism of osmoprotection. It is shown that the weak, nonspecific, and dynamic interactions of water and osmolytes with proteins can be characterized only statistically, and that the competition between protein-osmolyte and protein-water interactions is crucial in determining conformational stability. Osmoprotection is driven by a stronger exclusion of osmolytes from the denatured protein than from the native conformation, and water distribution has no significant effect on these changes at low osmolyte concentrations.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  denaturation; fluctuation solution theory; osmolytes; protein stability; statistical thermodynamics

Mesh:

Substances:

Year:  2017        PMID: 28678423      PMCID: PMC5626881          DOI: 10.1002/cphc.201700503

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  56 in total

1.  Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.

Authors:  Seishi Shimizu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-19       Impact factor: 11.205

Review 2.  Pressure as an environmental parameter for microbial life--a review.

Authors:  Aude Picard; Isabelle Daniel
Journal:  Biophys Chem       Date:  2013-07-01       Impact factor: 2.352

3.  Unifying hydrotropy under Gibbs phase rule.

Authors:  Seishi Shimizu; Nobuyuki Matubayasi
Journal:  Phys Chem Chem Phys       Date:  2017-09-13       Impact factor: 3.676

4.  Preferential solvation: dividing surface vs excess numbers.

Authors:  Seishi Shimizu; Nobuyuki Matubayasi
Journal:  J Phys Chem B       Date:  2014-04-01       Impact factor: 2.991

Review 5.  Protein denaturation. C. Theoretical models for the mechanism of denaturation.

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6.  Osmolyte depletion viewed in terms of the dividing membrane and its work of expansion against osmotic pressure.

Authors:  Seishi Shimizu; Nobuyuki Matubayasi
Journal:  Biophys Chem       Date:  2017-02-27       Impact factor: 2.352

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Authors:  M Gross; R Jaenicke
Journal:  Eur J Biochem       Date:  1994-04-15

Review 8.  The effect of high pressure upon proteins and other biomolecules.

Authors:  G Weber; H G Drickamer
Journal:  Q Rev Biophys       Date:  1983-02       Impact factor: 5.318

Review 9.  Co-evolution of proteins and solutions: protein adaptation versus cytoprotective micromolecules and their roles in marine organisms.

Authors:  Paul H Yancey; Joseph F Siebenaller
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

10.  To Polarize or Not to Polarize? Charge-on-Spring versus KBFF Models for Water and Methanol Bulk and Vapor-Liquid Interfacial Mixtures.

Authors:  Elizabeth A Ploetz; Ariën S Rustenburg; Daan P Geerke; Paul E Smith
Journal:  J Chem Theory Comput       Date:  2016-04-19       Impact factor: 6.006

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