Literature DB >> 24689966

Preferential solvation: dividing surface vs excess numbers.

Seishi Shimizu1, Nobuyuki Matubayasi.   

Abstract

How do osmolytes affect the conformation and configuration of supramolecular assembly, such as ion channel opening and actin polymerization? The key to the answer lies in the excess solvation numbers of water and osmolyte molecules; these numbers are determinable solely from experimental data, as guaranteed by the phase rule, as we show through the exact solution theory of Kirkwood and Buff (KB). The osmotic stress technique (OST), in contrast, purposes to yield alternative hydration numbers through the use of the dividing surface borrowed from the adsorption theory. However, we show (i) OST is equivalent, when it becomes exact, to the crowding effect in which the osmolyte exclusion dominates over hydration; (ii) crowding is not the universal driving force of the osmolyte effect (e.g., actin polymerization); (iii) the dividing surface for solvation is useful only for crowding, unlike in the adsorption theory which necessitates its use due to the phase rule. KB thus clarifies the true meaning and limitations of the older perspectives on preferential solvation (such as solvent binding models, crowding, and OST), and enables excess number determination without any further assumptions.

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Year:  2014        PMID: 24689966     DOI: 10.1021/jp410567c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Investigation of the electrostatic and hydration properties of DNA minor groove-binding by a heterocyclic diamidine by osmotic pressure.

Authors:  Noa Erlitzki; Kenneth Huang; Suela Xhani; Abdelbasset A Farahat; Arvind Kumar; David W Boykin; Gregory M K Poon
Journal:  Biophys Chem       Date:  2017-03-20       Impact factor: 2.352

2.  Lysozyme in water-acetonitrile mixtures: Preferential solvation at the inner edge of excess hydration.

Authors:  Vladimir A Sirotkin; Alexandra A Kuchierskaya
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

3.  Surface Area Estimation: Replacing the Brunauer-Emmett-Teller Model with the Statistical Thermodynamic Fluctuation Theory.

Authors:  Seishi Shimizu; Nobuyuki Matubayasi
Journal:  Langmuir       Date:  2022-06-17       Impact factor: 4.331

4.  How Osmolytes Counteract Pressure Denaturation on a Molecular Scale.

Authors:  Seishi Shimizu; Paul E Smith
Journal:  Chemphyschem       Date:  2017-07-05       Impact factor: 3.102

5.  Dissecting Dynamic and Hydration Contributions to Sequence-Dependent DNA Minor Groove Recognition.

Authors:  Van L T Ha; Noa Erlitzki; Abdelbasset A Farahat; Arvind Kumar; David W Boykin; Gregory M K Poon
Journal:  Biophys J       Date:  2020-08-20       Impact factor: 4.033

6.  Sorption: A Statistical Thermodynamic Fluctuation Theory.

Authors:  Seishi Shimizu; Nobuyuki Matubayasi
Journal:  Langmuir       Date:  2021-06-14       Impact factor: 3.882

7.  Synergy in protein-osmolyte mixtures.

Authors:  Jörg Rösgen
Journal:  J Phys Chem B       Date:  2014-12-17       Impact factor: 2.991

8.  Water activity in liquid food systems: A molecular scale interpretation.

Authors:  Andrew J Maneffa; Richard Stenner; Avtar S Matharu; James H Clark; Nobuyuki Matubayasi; Seishi Shimizu
Journal:  Food Chem       Date:  2017-06-09       Impact factor: 7.514

9.  Small Angle Neutron Scattering Studies of R67 Dihydrofolate Reductase, a Tetrameric Protein with Intrinsically Disordered N-Termini.

Authors:  Purva P Bhojane; Michael R Duff; Khushboo Bafna; Pratul Agarwal; Christopher Stanley; Elizabeth E Howell
Journal:  Biochemistry       Date:  2017-11-07       Impact factor: 3.162

  9 in total

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