| Literature DB >> 28675302 |
Alexina J Mason1, Manuel Gomes1, Richard Grieve1, Pinar Ulug2, Janet T Powell2, James Carpenter3.
Abstract
BACKGROUND/AIMS: The analyses of randomised controlled trials with missing data typically assume that, after conditioning on the observed data, the probability of missing data does not depend on the patient's outcome, and so the data are 'missing at random' . This assumption is usually implausible, for example, because patients in relatively poor health may be more likely to drop out. Methodological guidelines recommend that trials require sensitivity analysis, which is best informed by elicited expert opinion, to assess whether conclusions are robust to alternative assumptions about the missing data. A major barrier to implementing these methods in practice is the lack of relevant practical tools for eliciting expert opinion. We develop a new practical tool for eliciting expert opinion and demonstrate its use for randomised controlled trials with missing data.Entities:
Keywords: Bayesian analysis; Missing data; clinical trials; expert elicitation; pattern-mixture models; quality of life; sensitivity analysis
Mesh:
Year: 2017 PMID: 28675302 PMCID: PMC5648050 DOI: 10.1177/1740774517711442
Source DB: PubMed Journal: Clin Trials ISSN: 1740-7745 Impact factor: 2.486
Figure 1.Illustration of the estimation of treatment effectiveness using a pattern-mixture model that allows for outcome data to be MNAR.
represents the mean QoL for patients who returned their QoL questionnaires, represents the difference in the mean QoL between patients who did and did not return their QoL questionnaires and represents the proportion of patients who did not return their QoL questionnaires. E and O indicate the eEVAR and open repair treatment groups respectively.
Simple arithmetic example that uses hypothetical elicited values to re-calculate the effectiveness of eEVAR versus open repair on QoL score. The example uses a pattern-mixture model to allow for data that are MNAR.
Information from QoL data that are observed in the RCT:
sample mean (SE) QoL score for patients who completed QoL questionnaire
proportion of patients who did not return their QoL questionnaire
Information elicited from an expert:
mean (SD) of difference in mean QoL between patients who did and did not return their QoL questionnaire
Then a point estimate of the treatment difference can be calculated as
Assuming independence between variables, the variance (V) of the treatment difference is
and a 95% confidence interval (CI) for the treatment difference can be estimated as
Hence using a pattern-mixture model with expert information reports an estimate of the effectiveness of eEVAR versus open repair of treatment difference (95% CI) of 0.08 (−0.01, 0.17), compared to 0.07 (0.00, 0.14) for calculations based on the observed QoL alone. Note the wider confidence interval from using the pattern-mixture model, as this approach takes account of the uncertainty from the missing data that may be MNAR.
Figure 2.Screen shots from the elicitation tool.
Summary of the experts’ characteristics and knowledge of the IMPROVE trial results.
| All | Nurses[ | Doctors[ | ||||
|---|---|---|---|---|---|---|
| Number of responses | 26 | 9 | 17 | |||
| Conference response: n (%[ | 15 | (58%) | 6 | (67%) | 9 | (53%) |
| Years in current role: n (%[ | ||||||
| 2–3 years | 3 | (12%) | 2 | (22%) | 1 | (6%) |
| 4–6 years | 7 | (27%) | 2 | (22%) | 5 | (29%) |
| 7–10 years | 6 | (23%) | 2 | (22%) | 4 | (24%) |
| >10 years | 10 | (38%) | 3 | (33%) | 7 | (41%) |
| Familiarity with results: n (%[ | ||||||
| Some familiarity | 11 | (42%) | 8 | (89%) | 3 | (18%) |
| Familiar and have read the paper | 15 | (58%) | 1 | (11%) | 14 | (82%) |
| Reported treatment difference at 3 months: n (%[ | ||||||
| EVAR QoL > OPEN QoL | 21 | (81%) | 7 | (78%) | 14 | (82%) |
| OPEN QoL > EVAR QoL | 1 | (4%) | 1 | (11%) | 0 | (0%) |
| No difference | 2 | (8%) | 0 | (0%) | 2 | (12%) |
| Not sure | 2 | (8%) | 1 | (11%) | 1 | (6%) |
Includes vascular nurse specialists, research nurses and a consultant vascular nurse.
Includes consultant vascular surgeons, a consultant interventional radiologist and a vascular academic junior doctor acting as site trial coordinator.
Percentage of column total.
Summary of elicited QoL scores for IMPROVE trial patients with missing versus observed data.
| All | Nurses[ | Doctors[ | |
|---|---|---|---|
| Number of responses[ | 25 | 8 | 17 |
| Elicited scores: mean (SD) | |||
| Typical OPEN arm patient, who did not return a completed QoL questionnaire | |||
| Most likely QoL score (mean of normal distribution) | 61 (17) | 71 (10) | 56 (17) |
| Uncertainty about QoL score (SD of normal distribution) | 16 (12) | 18 (14) | 15 (11) |
| Typical eEVAR arm patient, who did not return a completed QoL questionnaire | |||
| Most likely QoL score (mean of normal distribution) | 72 (15) | 76 (11) | 70 (17) |
| Uncertainty about QoL score (SD of normal distribution) | 15 (12) | 18 (13) | 14 (12) |
| Differences in scores: mean (SD) | |||
| Typical OPEN arm patients, did not return QoL – did return QoL | −4 (17) | 6 (10) | −9 (17) |
| Typical did not return QoL patients, eEVAR arm – OPEN arm | 11 (11) | 4 (12) | 14 (10) |
| Correlation between QoL scores for non-respondents in the eEVAR and OPEN arms n(%[ | |||
| Positive | 13 (52%) | 3 (38%) | 10 (59%) |
| Zero | 11 (44%) | 5 (62%) | 6 (35%) |
| Negative | 1(4%) | 0(0%) | 1(6%) |
SD: standard deviation; eEVAR: emergency endovascular strategy; QoL: quality of life.
The QoL scale is from −20 to 100, and mean (SD) is across experts.
Includes vascular nurse specialists, research nurses and a consultant vascular nurse.
Includes consultant vascular surgeons, a consultant interventional radiologist and a vascular academic junior doctor acting as site trial coordinator.
Excludes one nurse who expressed almost complete uncertainty about the quality of life scores.
Percentage of column total.
Figure 3.Individual and pooled prior distributions for patients randomised to eEVAR and open repair arms: (a) eEVAR: all experts and (b) OPEN: all experts.
Thin grey lines = individual priors, thick black lines = smoothed pooled priors across all experts.
Although each individual prior has been elicited as a normal distribution, this restriction does not apply to the pooled priors which are a mixture of normal distributions.
Figure 4.Difference in mean quality of life score at 3 months between randomised arm (eEVAR - open repair) for survivors.
Each shaded rectangular strip shows the full posterior distribution of the difference in mean QoL at 3 months for survivors for one model run. The darkness at a point is proportional to the probability density, such that the strip is darkest at the maximum density and fades into the background at the minimum density. The posterior mean and 95% credible interval are marked.
*the posterior probability that the eEVAR QoL at 3 months is at least 0.03 greater than the open repair QoL. 0.03 is the minimum clinically important difference.[31]