Literature DB >> 28670648

Assessing Variability in Brain Tumor Segmentation to Improve Volumetric Accuracy and Characterization of Change.

Edgar A Rios Piedra1, Ricky K Taira1, Suzie El-Saden2, Benjamin M Ellingson3, Alex A T Bui1, William Hsu1.   

Abstract

Brain tumor analysis is moving towards volumetric assessment of magnetic resonance imaging (MRI), providing a more precise description of disease progression to better inform clinical decision-making and treatment planning. While a multitude of segmentation approaches exist, inherent variability in the results of these algorithms may incorrectly indicate changes in tumor volume. In this work, we present a systematic approach to characterize variability in tumor boundaries that utilizes equivalence tests as a means to determine whether a tumor volume has significantly changed over time. To demonstrate these concepts, 32 MRI studies from 8 patients were segmented using four different approaches (statistical classifier, region-based, edge-based, knowledge-based) to generate different regions of interest representing tumor extent. We showed that across all studies, the average Dice coefficient for the superset of the different methods was 0.754 (95% confidence interval 0.701-0.808) when compared to a reference standard. We illustrate how variability obtained by different segmentations can be used to identify significant changes in tumor volume between sequential time points. Our study demonstrates that variability is an inherent part of interpreting tumor segmentation results and should be considered as part of the interpretation process.

Entities:  

Year:  2016        PMID: 28670648      PMCID: PMC5489257          DOI: 10.1109/BHI.2016.7455914

Source DB:  PubMed          Journal:  IEEE EMBS Int Conf Biomed Health Inform


  12 in total

1.  Updated response assessment criteria for high-grade gliomas: response assessment in neuro-oncology working group.

Authors:  Patrick Y Wen; David R Macdonald; David A Reardon; Timothy F Cloughesy; A Gregory Sorensen; Evanthia Galanis; John Degroot; Wolfgang Wick; Mark R Gilbert; Andrew B Lassman; Christina Tsien; Tom Mikkelsen; Eric T Wong; Marc C Chamberlain; Roger Stupp; Kathleen R Lamborn; Michael A Vogelbaum; Martin J van den Bent; Susan M Chang
Journal:  J Clin Oncol       Date:  2010-03-15       Impact factor: 44.544

2.  Unified segmentation.

Authors:  John Ashburner; Karl J Friston
Journal:  Neuroimage       Date:  2005-04-01       Impact factor: 6.556

3.  Active contours without edges.

Authors:  T F Chan; L A Vese
Journal:  IEEE Trans Image Process       Date:  2001       Impact factor: 10.856

4.  Semi-automatic brain tumor segmentation by constrained MRFs using structural trajectories.

Authors:  Liang Zhao; Wei Wu; Jason J Corso
Journal:  Med Image Comput Comput Assist Interv       Date:  2013

Review 5.  A survey of MRI-based medical image analysis for brain tumor studies.

Authors:  Stefan Bauer; Roland Wiest; Lutz-P Nolte; Mauricio Reyes
Journal:  Phys Med Biol       Date:  2013-06-06       Impact factor: 3.609

Review 6.  Glioblastoma: therapeutic challenges, what lies ahead.

Authors:  Flavia R S Lima; Suzana Assad Kahn; Rossana C Soletti; Deborah Biasoli; Tercia Alves; Anna Carolina C da Fonseca; Celina Garcia; Luciana Romão; José Brito; Rosenilde Holanda-Afonso; Jane Faria; Helena Borges; Vivaldo Moura-Neto
Journal:  Biochim Biophys Acta       Date:  2012-06-05

7.  Neuromorphometry of primary brain tumors by magnetic resonance imaging.

Authors:  Nidiyare Hevia-Montiel; Pedro I Rodriguez-Perez; Paul J Lamothe-Molina; Alfonso Arellano-Reynoso; Ernesto Bribiesca; Marco A Alegria-Loyola
Journal:  J Med Imaging (Bellingham)       Date:  2015-05-12

Review 8.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

Review 9.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

10.  Multi-modal glioblastoma segmentation: man versus machine.

Authors:  Nicole Porz; Stefan Bauer; Alessia Pica; Philippe Schucht; Jürgen Beck; Rajeev Kumar Verma; Johannes Slotboom; Mauricio Reyes; Roland Wiest
Journal:  PLoS One       Date:  2014-05-07       Impact factor: 3.240

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