Literature DB >> 28663719

From Image Tiles to Web-Based Interactive Measurements in One Stop.

Antoine Vandecreme1, Michael Majurski1, Joe Chalfoun1, Keana Scott2, John Henry J Scott2, Mary Brady1, Peter Bajcsy1.   

Abstract

This article introduces readers to a web-based solution useful for interactive nanoscale measurements of centimeter-sized specimens. This solution is a client-server system that promotes collaborative measurements and discovery. The system consists of multiple computational modules that enable uploading microscopy images, extracting metadata, assembling many nanometer-resolution images into an image covering a centimeter-sized area, and interactive viewing and measuring of objects of interest at multiple length scales over terabyte-sized images. We illustrate the use of the system on images of aerosolized nanoparticles and dye particles on printing paper.

Entities:  

Year:  2015        PMID: 28663719      PMCID: PMC5486220          DOI: 10.1017/S1431927615001245

Source DB:  PubMed          Journal:  Micros Today        ISSN: 1551-9295


  2 in total

1.  Empirical gradient threshold technique for automated segmentation across image modalities and cell lines.

Authors:  J Chalfoun; M Majurski; A Peskin; C Breen; P Bajcsy; M Brady
Journal:  J Microsc       Date:  2015-06-05       Impact factor: 1.758

2.  Globally optimal stitching of tiled 3D microscopic image acquisitions.

Authors:  Stephan Preibisch; Stephan Saalfeld; Pavel Tomancak
Journal:  Bioinformatics       Date:  2009-04-03       Impact factor: 6.937

  2 in total

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