Literature DB >> 28658210

Cancer genomics: Less is more in the hunt for driver mutations.

Sushant Kumar1, Mark Gerstein1,2.   

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Year:  2017        PMID: 28658210     DOI: 10.1038/nature23085

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


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  9 in total

Review 1.  Role of non-coding sequence variants in cancer.

Authors:  Ekta Khurana; Yao Fu; Dimple Chakravarty; Francesca Demichelis; Mark A Rubin; Mark Gerstein
Journal:  Nat Rev Genet       Date:  2016-01-19       Impact factor: 53.242

2.  The Cancer Genome Atlas Pan-Cancer analysis project.

Authors:  John N Weinstein; Eric A Collisson; Gordon B Mills; Kenna R Mills Shaw; Brad A Ozenberger; Kyle Ellrott; Ilya Shmulevich; Chris Sander; Joshua M Stuart
Journal:  Nat Genet       Date:  2013-10       Impact factor: 38.330

3.  Recurrent and functional regulatory mutations in breast cancer.

Authors:  Esther Rheinbay; Prasanna Parasuraman; Jonna Grimsby; Grace Tiao; Jesse M Engreitz; Jaegil Kim; Michael S Lawrence; Amaro Taylor-Weiner; Sergio Rodriguez-Cuevas; Mara Rosenberg; Julian Hess; Chip Stewart; Yosef E Maruvka; Petar Stojanov; Maria L Cortes; Sara Seepo; Carrie Cibulskis; Adam Tracy; Trevor J Pugh; Jesse Lee; Zongli Zheng; Leif W Ellisen; A John Iafrate; Jesse S Boehm; Stacey B Gabriel; Matthew Meyerson; Todd R Golub; Jose Baselga; Alfredo Hidalgo-Miranda; Toshi Shioda; Andre Bernards; Eric S Lander; Gad Getz
Journal:  Nature       Date:  2017-06-28       Impact factor: 49.962

4.  Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking.

Authors:  Joachim Weischenfeldt; Taronish Dubash; Alexandros P Drainas; Balca R Mardin; Yuanyuan Chen; Adrian M Stütz; Sebastian M Waszak; Graziella Bosco; Ann Rita Halvorsen; Benjamin Raeder; Theocharis Efthymiopoulos; Serap Erkek; Christine Siegl; Hermann Brenner; Odd Terje Brustugun; Sebastian M Dieter; Paul A Northcott; Iver Petersen; Stefan M Pfister; Martin Schneider; Steinar K Solberg; Erik Thunissen; Wilko Weichert; Thomas Zichner; Roman Thomas; Martin Peifer; Aslaug Helland; Claudia R Ball; Martin Jechlinger; Rocio Sotillo; Hanno Glimm; Jan O Korbel
Journal:  Nat Genet       Date:  2016-11-21       Impact factor: 38.330

5.  Integrative annotation of variants from 1092 humans: application to cancer genomics.

Authors:  Ekta Khurana; Yao Fu; Vincenza Colonna; Xinmeng Jasmine Mu; Hyun Min Kang; Tuuli Lappalainen; Andrea Sboner; Lucas Lochovsky; Jieming Chen; Arif Harmanci; Jishnu Das; Alexej Abyzov; Suganthi Balasubramanian; Kathryn Beal; Dimple Chakravarty; Daniel Challis; Yuan Chen; Declan Clarke; Laura Clarke; Fiona Cunningham; Uday S Evani; Paul Flicek; Robert Fragoza; Erik Garrison; Richard Gibbs; Zeynep H Gümüş; Javier Herrero; Naoki Kitabayashi; Yong Kong; Kasper Lage; Vaja Liluashvili; Steven M Lipkin; Daniel G MacArthur; Gabor Marth; Donna Muzny; Tune H Pers; Graham R S Ritchie; Jeffrey A Rosenfeld; Cristina Sisu; Xiaomu Wei; Michael Wilson; Yali Xue; Fuli Yu; Emmanouil T Dermitzakis; Haiyuan Yu; Mark A Rubin; Chris Tyler-Smith; Mark Gerstein
Journal:  Science       Date:  2013-10-04       Impact factor: 47.728

6.  LARVA: an integrative framework for large-scale analysis of recurrent variants in noncoding annotations.

Authors:  Lucas Lochovsky; Jing Zhang; Yao Fu; Ekta Khurana; Mark Gerstein
Journal:  Nucleic Acids Res       Date:  2015-08-24       Impact factor: 16.971

7.  Genome-wide analysis of noncoding regulatory mutations in cancer.

Authors:  Nils Weinhold; Anders Jacobsen; Nikolaus Schultz; Chris Sander; William Lee
Journal:  Nat Genet       Date:  2014-09-28       Impact factor: 38.330

8.  An integrated encyclopedia of DNA elements in the human genome.

Authors: 
Journal:  Nature       Date:  2012-09-06       Impact factor: 49.962

9.  Comprehensive identification of mutational cancer driver genes across 12 tumor types.

Authors:  David Tamborero; Abel Gonzalez-Perez; Christian Perez-Llamas; Jordi Deu-Pons; Cyriac Kandoth; Jüri Reimand; Michael S Lawrence; Gad Getz; Gary D Bader; Li Ding; Nuria Lopez-Bigas
Journal:  Sci Rep       Date:  2013-10-02       Impact factor: 4.379

  9 in total
  5 in total

1.  Novel tumour suppressive protein encoded by circular RNA, circ-SHPRH, in glioblastomas.

Authors:  S Begum; A Yiu; J Stebbing; L Castellano
Journal:  Oncogene       Date:  2018-04-30       Impact factor: 9.867

2.  Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences.

Authors:  Sushant Kumar; Jonathan Warrell; Shantao Li; Patrick D McGillivray; William Meyerson; Leonidas Salichos; Arif Harmanci; Alexander Martinez-Fundichely; Calvin W Y Chan; Morten Muhlig Nielsen; Lucas Lochovsky; Yan Zhang; Xiaotong Li; Shaoke Lou; Jakob Skou Pedersen; Carl Herrmann; Gad Getz; Ekta Khurana; Mark B Gerstein
Journal:  Cell       Date:  2020-02-20       Impact factor: 41.582

3.  Identification of Cancer Drivers at CTCF Insulators in 1,962 Whole Genomes.

Authors:  Eric Minwei Liu; Alexander Martinez-Fundichely; Bianca Jay Diaz; Boaz Aronson; Tawny Cuykendall; Matthew MacKay; Priyanka Dhingra; Elissa W P Wong; Ping Chi; Effie Apostolou; Neville E Sanjana; Ekta Khurana
Journal:  Cell Syst       Date:  2019-05-08       Impact factor: 10.304

4.  Combined burden and functional impact tests for cancer driver discovery using DriverPower.

Authors:  Shimin Shuai; Steven Gallinger; Lincoln Stein
Journal:  Nat Commun       Date:  2020-02-05       Impact factor: 14.919

5.  Reliability of BRAF mutation detection using plasma sample: A systematic review and meta-analysis

Authors:  Peng Ye; Peiling Cai; Jing Xie; Jie Zhang
Journal:  Medicine (Baltimore)       Date:  2021-12-23       Impact factor: 1.817

  5 in total

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