Literature DB >> 28649677

Outcome Prediction for Patient with High-Grade Gliomas from Brain Functional and Structural Networks.

Luyan Liu1, Han Zhang2, Islem Rekik2, Xiaobo Chen2, Qian Wang1, Dinggang Shen2.   

Abstract

High-grade glioma (HGG) is a lethal cancer, which is characterized by very poor prognosis. To help optimize treatment strategy, accurate preoperative prediction of HGG patient's outcome (i.e., survival time) is of great clinical value. However, there are huge individual variability of HGG, which produces a large variation in survival time, thus making prognostic prediction more challenging. Previous brain imaging-based outcome prediction studies relied only on the imaging intensity inside or slightly around the tumor, while ignoring any information that is located far away from the lesion (i.e., the "normal appearing" brain tissue). Notably, in addition to altering MR image intensity, we hypothesize that the HGG growth and its mass effect also change both structural (can be modeled by diffusion tensor imaging (DTI)) and functional brain connectivities (estimated by functional magnetic resonance imaging (rs-fMRI)). Therefore, integrating connectomics information in outcome prediction could improve prediction accuracy. To this end, we unprecedentedly devise a machine learning-based HGG prediction framework that can effectively extract valuable features from complex human brain connectome using network analysis tools, followed by a novel multi-stage feature selection strategy to single out good features while reducing feature redundancy. Ultimately, we use support vector machine (SVM) to classify HGG outcome as either bad (survival time ≤ 650 days) or good (survival time >650 days). Our method achieved 75 % prediction accuracy. We also found that functional and structural networks provide complementary information for the outcome prediction, thus leading to increased prediction accuracy compared with the baseline method, which only uses the basic clinical information (63.2 %).

Entities:  

Mesh:

Year:  2016        PMID: 28649677      PMCID: PMC5479332          DOI: 10.1007/978-3-319-46723-8_4

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  8 in total

1.  Complex network measures of brain connectivity: uses and interpretations.

Authors:  Mikail Rubinov; Olaf Sporns
Journal:  Neuroimage       Date:  2009-10-09       Impact factor: 6.556

2.  GRETNA: a graph theoretical network analysis toolbox for imaging connectomics.

Authors:  Jinhui Wang; Xindi Wang; Mingrui Xia; Xuhong Liao; Alan Evans; Yong He
Journal:  Front Hum Neurosci       Date:  2015-06-30       Impact factor: 3.169

3.  Imaging patterns predict patient survival and molecular subtype in glioblastoma via machine learning techniques.

Authors:  Luke Macyszyn; Hamed Akbari; Jared M Pisapia; Xiao Da; Mark Attiah; Vadim Pigrish; Yingtao Bi; Sharmistha Pal; Ramana V Davuluri; Laura Roccograndi; Nadia Dahmane; Maria Martinez-Lage; George Biros; Ronald L Wolf; Michel Bilello; Donald M O'Rourke; Christos Davatzikos
Journal:  Neuro Oncol       Date:  2015-07-16       Impact factor: 12.300

4.  Multivariate classification of social anxiety disorder using whole brain functional connectivity.

Authors:  Feng Liu; Wenbin Guo; Jean-Paul Fouche; Yifeng Wang; Wenqin Wang; Jurong Ding; Ling Zeng; Changjian Qiu; Qiyong Gong; Wei Zhang; Huafu Chen
Journal:  Brain Struct Funct       Date:  2013-09-27       Impact factor: 3.270

5.  Survival analysis of patients with high-grade gliomas based on data mining of imaging variables.

Authors:  E I Zacharaki; N Morita; P Bhatt; D M O'Rourke; E R Melhem; C Davatzikos
Journal:  AJNR Am J Neuroradiol       Date:  2012-02-09       Impact factor: 3.825

6.  DPARSF: A MATLAB Toolbox for "Pipeline" Data Analysis of Resting-State fMRI.

Authors:  Yan Chao-Gan; Zang Yu-Feng
Journal:  Front Syst Neurosci       Date:  2010-05-14

7.  Outcome prediction in patients with glioblastoma by using imaging, clinical, and genomic biomarkers: focus on the nonenhancing component of the tumor.

Authors:  Rajan Jain; Laila M Poisson; David Gutman; Lisa Scarpace; Scott N Hwang; Chad A Holder; Max Wintermark; Arvind Rao; Rivka R Colen; Justin Kirby; John Freymann; C Carl Jaffe; Tom Mikkelsen; Adam Flanders
Journal:  Radiology       Date:  2014-03-19       Impact factor: 11.105

8.  PANDA: a pipeline toolbox for analyzing brain diffusion images.

Authors:  Zaixu Cui; Suyu Zhong; Pengfei Xu; Yong He; Gaolang Gong
Journal:  Front Hum Neurosci       Date:  2013-02-21       Impact factor: 3.169

  8 in total
  12 in total

1.  Treatment-naïve first episode depression classification based on high-order brain functional network.

Authors:  Yanting Zheng; Xiaobo Chen; Danian Li; Yujie Liu; Xin Tan; Yi Liang; Han Zhang; Shijun Qiu; Dinggang Shen
Journal:  J Affect Disord       Date:  2019-05-28       Impact factor: 4.839

Review 2.  Precision Digital Oncology: Emerging Role of Radiomics-based Biomarkers and Artificial Intelligence for Advanced Imaging and Characterization of Brain Tumors.

Authors:  Reza Forghani
Journal:  Radiol Imaging Cancer       Date:  2020-07-31

3.  An in silico glioblastoma microenvironment model dissects the immunological mechanisms of resistance to PD-1 checkpoint blockade immunotherapy.

Authors:  Zhuoyu Zhang; Lunan Liu; Chao Ma; Xin Cui; Raymond H W Lam; Weiqiang Chen
Journal:  Small Methods       Date:  2021-04-22

4.  Characterization of structural and functional network organization after focal prefrontal lesions in humans in proof of principle study.

Authors:  Maryann P Noonan; Maiya R Geddes; Rogier B Mars; Lesley K Fellows
Journal:  Brain Struct Funct       Date:  2022-10-07       Impact factor: 3.748

5.  Multi-label Inductive Matrix Completion for Joint MGMT and IDH1 Status Prediction for Glioma Patients.

Authors:  Lei Chen; Han Zhang; Kim-Han Thung; Luyan Liu; Junfeng Lu; Jinsong Wu; Qian Wang; Dinggang Shen
Journal:  Med Image Comput Comput Assist Interv       Date:  2017-09-04

6.  Deep Learning of Imaging Phenotype and Genotype for Predicting Overall Survival Time of Glioblastoma Patients.

Authors:  Zhenyu Tang; Yuyun Xu; Lei Jin; Abudumijiti Aibaidula; Junfeng Lu; Zhicheng Jiao; Jinsong Wu; Han Zhang; Dinggang Shen
Journal:  IEEE Trans Med Imaging       Date:  2020-01-06       Impact factor: 10.048

7.  Test-Retest Reliability of "High-Order" Functional Connectivity in Young Healthy Adults.

Authors:  Han Zhang; Xiaobo Chen; Yu Zhang; Dinggang Shen
Journal:  Front Neurosci       Date:  2017-08-02       Impact factor: 4.677

8.  Real-time presurgical resting-state fMRI in patients with brain tumors: Quality control and comparison with task-fMRI and intraoperative mapping.

Authors:  Kishore Vakamudi; Stefan Posse; Rex Jung; Brad Cushnyr; Muhammad O Chohan
Journal:  Hum Brain Mapp       Date:  2019-11-06       Impact factor: 5.038

9.  Pre-surgical connectome features predict IDH status in diffuse gliomas.

Authors:  Shelli R Kesler; Rebecca A Harrison; Melissa L Petersen; Vikram Rao; Hannah Dyson; Kristin Alfaro-Munoz; Shiao-Pei Weathers; John de Groot
Journal:  Oncotarget       Date:  2019-11-05

Review 10.  Information-Based Medicine in Glioma Patients: A Clinical Perspective.

Authors:  Joeky Tamba Senders; Maya Harary; Brittany Morgan Stopa; Patrick Staples; Marike Lianne Daphne Broekman; Timothy Richard Smith; William Brian Gormley; Omar Arnaout
Journal:  Comput Math Methods Med       Date:  2018-06-13       Impact factor: 2.238

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