Literature DB >> 28648615

Structural Biology and the Design of New Therapeutics: From HIV and Cancer to Mycobacterial Infections: A Paper Dedicated to John Kendrew.

Sherine E Thomas1, Vitor Mendes1, So Yeon Kim1, Sony Malhotra1, Bernardo Ochoa-Montaño1, Michal Blaszczyk1, Tom L Blundell2.   

Abstract

Interest in applications of protein crystallography to medicine was evident, as the first high-resolution structures emerged in the 50s and 60s. In Cambridge, Max Perutz and John Kendrew sought to understand mutations in sickle cell and other genetic diseases related to hemoglobin, while in Oxford, the group of Dorothy Hodgkin became interested in long-lasting zinc-insulin crystals for treatment of diabetes and later considered insulin redesign, as synthetic insulins became possible. The use of protein crystallography in structure-guided drug discovery emerged as enzyme structures allowed the identification of potential inhibitor-binding sites and optimization of interactions of hits using the structure of the target protein. Early examples of this approach were the use of the structure of renin to design antihypertensives and the structure of HIV protease in design of AIDS antivirals. More recently, use of structure-guided design with fragment-based drug discovery, which reduces the size of screening libraries by decreasing complexity, has improved ligand efficiency in drug design and has been used to progress three oncology drugs through clinical trials to FDA approval. We exemplify current developments in structure-guided target identification and fragment-based lead discovery with efforts to develop new antimicrobials for mycobacterial infections.
Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  cancer; drug design/discovery; fragment-based; infectious disease; structure-guided

Mesh:

Substances:

Year:  2017        PMID: 28648615     DOI: 10.1016/j.jmb.2017.06.014

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  11 in total

1.  Targeting Allostery with Avatars to Design Inhibitors Assessed by Cell Activity: Dissecting MRE11 Endo- and Exonuclease Activities.

Authors:  Davide Moiani; Daryl A Ronato; Chris A Brosey; Andrew S Arvai; Aleem Syed; Jean-Yves Masson; Elena Petricci; John A Tainer
Journal:  Methods Enzymol       Date:  2018-02-22       Impact factor: 1.600

2.  Methods for Discovering and Targeting Druggable Protein-Protein Interfaces and Their Application to Repurposing.

Authors:  E Sila Ozdemir; Farideh Halakou; Ruth Nussinov; Attila Gursoy; Ozlem Keskin
Journal:  Methods Mol Biol       Date:  2019

3.  Structural Characterization of Mycobacterium abscessus Phosphopantetheine Adenylyl Transferase Ligand Interactions: Implications for Fragment-Based Drug Design.

Authors:  Sherine E Thomas; William J McCarthy; Jamal El Bakali; Karen P Brown; So Yeon Kim; Michal Blaszczyk; Vítor Mendes; Chris Abell; R Andres Floto; Anthony G Coyne; Tom L Blundell
Journal:  Front Mol Biosci       Date:  2022-05-30

Review 4.  Mycobacterial genomics and structural bioinformatics: opportunities and challenges in drug discovery.

Authors:  Vaishali P Waman; Sundeep Chaitanya Vedithi; Sherine E Thomas; Bridget P Bannerman; Asma Munir; Marcin J Skwark; Sony Malhotra; Tom L Blundell
Journal:  Emerg Microbes Infect       Date:  2019       Impact factor: 7.163

Review 5.  The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.

Authors:  Vaishali P Waman; Neeladri Sen; Mihaly Varadi; Antoine Daina; Shoshana J Wodak; Vincent Zoete; Sameer Velankar; Christine Orengo
Journal:  Brief Bioinform       Date:  2021-03-22       Impact factor: 11.622

6.  Fragment-based discovery of a new class of inhibitors targeting mycobacterial tRNA modification.

Authors:  Sherine E Thomas; Andrew J Whitehouse; Karen Brown; Sophie Burbaud; Juan M Belardinelli; Jasper Sangen; Ramanuj Lahiri; Mark Daben J Libardo; Pooja Gupta; Sony Malhotra; Helena I M Boshoff; Mary Jackson; Chris Abell; Anthony G Coyne; Tom L Blundell; Rodrigo Andres Floto; Vítor Mendes
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

Review 7.  In silico Strategies to Support Fragment-to-Lead Optimization in Drug Discovery.

Authors:  Lauro Ribeiro de Souza Neto; José Teófilo Moreira-Filho; Bruno Junior Neves; Rocío Lucía Beatriz Riveros Maidana; Ana Carolina Ramos Guimarães; Nicholas Furnham; Carolina Horta Andrade; Floriano Paes Silva
Journal:  Front Chem       Date:  2020-02-18       Impact factor: 5.221

Review 8.  Structure-based drug design: aiming for a perfect fit.

Authors:  Rob L M van Montfort; Paul Workman
Journal:  Essays Biochem       Date:  2017-11-08       Impact factor: 8.000

Review 9.  Current Strategies and Applications for Precision Drug Design.

Authors:  Chen Wang; Pan Xu; Luyu Zhang; Jing Huang; Kongkai Zhu; Cheng Luo
Journal:  Front Pharmacol       Date:  2018-07-18       Impact factor: 5.810

10.  Lattice engineering enables definition of molecular features allowing for potent small-molecule inhibition of HIV-1 entry.

Authors:  Yen-Ting Lai; Tao Wang; Sijy O'Dell; Mark K Louder; Arne Schön; Crystal S F Cheung; Gwo-Yu Chuang; Aliaksandr Druz; Bob Lin; Krisha McKee; Dongjun Peng; Yongping Yang; Baoshan Zhang; Alon Herschhorn; Joseph Sodroski; Robert T Bailer; Nicole A Doria-Rose; John R Mascola; David R Langley; Peter D Kwong
Journal:  Nat Commun       Date:  2019-01-03       Impact factor: 14.919

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