Literature DB >> 28647055

Uncovering Gene Regulatory Networks Controlling Plant Cell Differentiation.

Colleen Drapek1, Erin E Sparks1, Philip N Benfey2.   

Abstract

The development of multicellular organisms relies on the precise regulation of cellular differentiation. As such, there has been significant effort invested to understand the process through which an immature cell undergoes differentiation. In this review, we highlight key discoveries and advances that have contributed to our understanding of the transcriptional networks underlying Arabidopsis root endodermal differentiation. To conclude, we propose perspectives on how advances in molecular biology, microscopy, and nucleotide sequencing will provide the tools to test the biological significance of these gene regulatory networks (GRN).
Copyright © 2017 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Arabidopsis root; cell differentiation; endodermis

Mesh:

Year:  2017        PMID: 28647055      PMCID: PMC5522350          DOI: 10.1016/j.tig.2017.05.002

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  63 in total

1.  Adaptation of Root Function by Nutrient-Induced Plasticity of Endodermal Differentiation.

Authors:  Marie Barberon; Joop Engelbertus Martinus Vermeer; Damien De Bellis; Peng Wang; Sadaf Naseer; Tonni Grube Andersen; Bruno Martin Humbel; Christiane Nawrath; Junpei Takano; David Edward Salt; Niko Geldner
Journal:  Cell       Date:  2016-01-14       Impact factor: 41.582

2.  Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth.

Authors:  R Sozzani; H Cui; M A Moreno-Risueno; W Busch; J M Van Norman; T Vernoux; S M Brady; W Dewitte; J A H Murray; P N Benfey
Journal:  Nature       Date:  2010-07-01       Impact factor: 49.962

3.  DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins.

Authors:  Hideki Yoshida; Ko Hirano; Tomomi Sato; Nobutaka Mitsuda; Mika Nomoto; Kenichiro Maeo; Eriko Koketsu; Rie Mitani; Mayuko Kawamura; Sumie Ishiguro; Yasuomi Tada; Masaru Ohme-Takagi; Makoto Matsuoka; Miyako Ueguchi-Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

4.  Polarly localized kinase SGN1 is required for Casparian strip integrity and positioning.

Authors:  Julien Alassimone; Satoshi Fujita; Verónica G Doblas; Maritza van Dop; Marie Barberon; Lothar Kalmbach; Joop E M Vermeer; Nelson Rojas-Murcia; Luca Santuari; Christian S Hardtke; Niko Geldner
Journal:  Nat Plants       Date:  2016-07-25       Impact factor: 15.793

5.  Callose biosynthesis regulates symplastic trafficking during root development.

Authors:  Anne Vatén; Jan Dettmer; Shuang Wu; York-Dieter Stierhof; Shunsuke Miyashima; Shri Ram Yadav; Christina J Roberts; Ana Campilho; Vincent Bulone; Raffael Lichtenberger; Satu Lehesranta; Ari Pekka Mähönen; Jae-Yean Kim; Eija Jokitalo; Norbert Sauer; Ben Scheres; Keiji Nakajima; Annelie Carlsbecker; Kimberly L Gallagher; Ykä Helariutta
Journal:  Dev Cell       Date:  2011-12-13       Impact factor: 12.270

6.  SCARECROW-LIKE23 and SCARECROW jointly specify endodermal cell fate but distinctly control SHORT-ROOT movement.

Authors:  Yuchen Long; Joachim Goedhart; Martinus Schneijderberg; Inez Terpstra; Akie Shimotohno; Benjamin P Bouchet; Anna Akhmanova; Theodorus W J Gadella; Renze Heidstra; Ben Scheres; Ikram Blilou
Journal:  Plant J       Date:  2015-11       Impact factor: 6.417

7.  Molecular analysis of SCARECROW function reveals a radial patterning mechanism common to root and shoot.

Authors:  J W Wysocka-Diller; Y Helariutta; H Fukaki; J E Malamy; P N Benfey
Journal:  Development       Date:  2000-02       Impact factor: 6.868

8.  A stele-enriched gene regulatory network in the Arabidopsis root.

Authors:  Siobhan M Brady; Lifang Zhang; Molly Megraw; Natalia J Martinez; Eric Jiang; Charles S Yi; Weilin Liu; Anna Zeng; Mallorie Taylor-Teeples; Dahae Kim; Sebastian Ahnert; Uwe Ohler; Doreen Ware; Albertha J M Walhout; Philip N Benfey
Journal:  Mol Syst Biol       Date:  2011-01-18       Impact factor: 11.429

9.  Whole-genome analysis of the SHORT-ROOT developmental pathway in Arabidopsis.

Authors:  Mitchell P Levesque; Teva Vernoux; Wolfgang Busch; Hongchang Cui; Jean Y Wang; Ikram Blilou; Hala Hassan; Keiji Nakajima; Noritaka Matsumoto; Jan U Lohmann; Ben Scheres; Philip N Benfey
Journal:  PLoS Biol       Date:  2006-05-02       Impact factor: 8.029

10.  Cellular organisation of the Arabidopsis thaliana root.

Authors:  L Dolan; K Janmaat; V Willemsen; P Linstead; S Poethig; K Roberts; B Scheres
Journal:  Development       Date:  1993-09       Impact factor: 6.868

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  16 in total

1.  Step by step evolution of Indeterminate Domain (IDD) transcriptional regulators: from algae to angiosperms.

Authors:  Santiago Prochetto; Renata Reinheimer
Journal:  Ann Bot       Date:  2020-06-19       Impact factor: 4.357

Review 2.  A Conceptual Framework for Cell Identity Transitions in Plants.

Authors:  Idan Efroni
Journal:  Plant Cell Physiol       Date:  2018-04-01       Impact factor: 4.927

3.  It's All in the Neighborhood: SHORTROOT-Mediated Intercellular Signals Coordinate Phloem Development in the Root.

Authors:  Rachel Shahan
Journal:  Plant Cell       Date:  2020-03-04       Impact factor: 11.277

4.  scCloudMine: A cloud-based app for visualization, comparison, and exploration of single-cell transcriptomic data.

Authors:  Mathew G Lewsey; Changyu Yi; Oliver Berkowitz; Felipe Ayora; Maurice Bernado; James Whelan
Journal:  Plant Commun       Date:  2022-01-22

Review 5.  Single-cell analysis of cell identity in the Arabidopsis root apical meristem: insights and opportunities.

Authors:  Rachel Shahan; Trevor M Nolan; Philip N Benfey
Journal:  J Exp Bot       Date:  2021-10-13       Impact factor: 7.298

6.  A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants.

Authors:  Rachel Shahan; Che-Wei Hsu; Trevor M Nolan; Benjamin J Cole; Isaiah W Taylor; Laura Greenstreet; Stephen Zhang; Anton Afanassiev; Anna Hendrika Cornelia Vlot; Geoffrey Schiebinger; Philip N Benfey; Uwe Ohler
Journal:  Dev Cell       Date:  2022-02-07       Impact factor: 13.417

7.  The conserved molting/circadian rhythm regulator NHR-23/NR1F1 serves as an essential co-regulator of C. elegans spermatogenesis.

Authors:  James Matthew Ragle; Abigail L Aita; Kayleigh N Morrison; Raquel Martinez-Mendez; Hannah N Saeger; Guinevere A Ashley; Londen C Johnson; Katherine A Schubert; Diane C Shakes; Jordan D Ward
Journal:  Development       Date:  2020-11-27       Impact factor: 6.862

Review 8.  Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes.

Authors:  Frauke Augstein; Annelie Carlsbecker
Journal:  Front Plant Sci       Date:  2018-09-25       Impact factor: 5.753

9.  Minimum requirements for changing and maintaining endodermis cell identity in the Arabidopsis root.

Authors:  Colleen Drapek; Erin E Sparks; Peter Marhavy; Isaiah Taylor; Tonni G Andersen; Jessica H Hennacy; Niko Geldner; Philip N Benfey
Journal:  Nat Plants       Date:  2018-07-30       Impact factor: 15.793

10.  Recurrent requirement for the m6A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.

Authors:  Laura Arribas-Hernández; Sara Simonini; Mathias Henning Hansen; Esther Botterweg Paredes; Simon Bressendorff; Yang Dong; Lars Østergaard; Peter Brodersen
Journal:  Development       Date:  2020-07-24       Impact factor: 6.862

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