Literature DB >> 28645142

Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn.

J K Teisher1, M R McKain2, B A Schaal1, E A Kellogg2.   

Abstract

Background and Aims: Subfamily Arundinoideae represents one of the last unsolved taxonomic mysteries in the grass family (Poaceae) due to the narrow and remote distributions of many of its 19 morphologically and ecologically heterogeneous genera. Resolving the phylogenetic relationships of these genera could have substantial implications for understanding character evolution in the grasses, for example the twisted geniculate awn - a hygroscopic awn that has been shown to be important in seed germination for some grass species. In this study, the phylogenetic positions of most arundinoid genera were determined using DNA from herbarium specimens, and their placement affects interpretation of this ecologically important trait.
Methods: A phylogenetic analysis was conducted on a matrix of full-plastome sequences from 123 species in 107 genera representing all grass subfamilies, with 15 of the 19 genera in subfamily Arundinoideae. Parsimony and maximum likelihood mapping approaches were used to estimate ancestral states for presence of a geniculate lemma awn with a twisted column across Poaceae. Lastly, anatomical characters were examined for former arundinoid taxa using light microscopy and scanning electron microscopy. Key
Results: Four genera traditionally included in Arundinoideae fell outside the subfamily in the plastome phylogeny, with the remaining 11 genera forming Arundinoideae sensu stricto . The twisted geniculate awn has originated independently at least five times in the PACMAD grasses, in the subfamilies Panicoideae, Danthonioideae/Chloridoideae and Arundinoideae. Morphological and anatomical characters support the new positions of the misplaced arundinoid genera in the phylogeny, but also highlight convergent and parallel evolution in the grasses. Conclusions: In placing the majority of arundinoid genera in a phylogenetic framework, our study answers one of the last remaining big questions in grass taxonomy while highlighting examples of convergent evolution in an ecologically important trait, the hygroscopic, twisted geniculate awn.
© The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Keywords:  Arundinoideae; Crinipes group; PACMAD grasses; Poaceae; awns; plastome phylogenomics

Mesh:

Substances:

Year:  2017        PMID: 28645142      PMCID: PMC5714200          DOI: 10.1093/aob/mcx058

Source DB:  PubMed          Journal:  Ann Bot        ISSN: 0305-7364            Impact factor:   4.357


  27 in total

1.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

Authors:  J Castresana
Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

2.  Phylogenetic structure in the grass family (Poaceae): evidence from the nuclear gene phytochrome B.

Authors:  S Mathews; R C Tsai; E A Kellogg
Journal:  Am J Bot       Date:  2000-01       Impact factor: 3.844

3.  Fast gapped-read alignment with Bowtie 2.

Authors:  Ben Langmead; Steven L Salzberg
Journal:  Nat Methods       Date:  2012-03-04       Impact factor: 28.547

4.  Decoupled taxonomic radiation and ecological expansion of open-habitat grasses in the Cenozoic of North America.

Authors:  Caroline A E Strömberg
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-11       Impact factor: 11.205

5.  The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features.

Authors:  Leah M Morris; Melvin R Duvall
Journal:  Am J Bot       Date:  2010-03-02       Impact factor: 3.844

6.  MAFFT multiple sequence alignment software version 7: improvements in performance and usability.

Authors:  Kazutaka Katoh; Daron M Standley
Journal:  Mol Biol Evol       Date:  2013-01-16       Impact factor: 16.240

7.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

8.  Resolving deep relationships of PACMAD grasses: a phylogenomic approach.

Authors:  Joseph L Cotton; William P Wysocki; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin Mayfield-Jones; Melvin R Duvall
Journal:  BMC Plant Biol       Date:  2015-07-11       Impact factor: 4.215

9.  Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.

Authors:  Michael R McKain; Ryan H Hartsock; Molly M Wohl; Elizabeth A Kellogg
Journal:  Bioinformatics       Date:  2016-09-14       Impact factor: 6.937

10.  How to open the treasure chest? Optimising DNA extraction from herbarium specimens.

Authors:  Tiina Särkinen; Martijn Staats; James E Richardson; Robyn S Cowan; Freek T Bakker
Journal:  PLoS One       Date:  2012-08-28       Impact factor: 3.240

View more
  9 in total

1.  Fusoid cells in the grass family Poaceae (Poales): a developmental study reveals homologies and suggests new insights into their functional role in young leaves.

Authors:  Thales D Leandro; Tatiane Maria Rodrigues; Lynn G Clark; Vera Lucia Scatena
Journal:  Ann Bot       Date:  2018-11-03       Impact factor: 4.357

2.  Robust DNA Isolation and High-throughput Sequencing Library Construction for Herbarium Specimens.

Authors:  Saman Saeidi; Michael R McKain; Elizabeth A Kellogg
Journal:  J Vis Exp       Date:  2018-03-08       Impact factor: 1.355

3.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

4.  Sterile Spikelets Contribute to Yield in Sorghum and Related Grasses.

Authors:  Taylor AuBuchon-Elder; Viktoriya Coneva; David M Goad; Lauren M Jenkins; Yunqing Yu; Doug K Allen; Elizabeth A Kellogg
Journal:  Plant Cell       Date:  2020-09-01       Impact factor: 11.277

Review 5.  Practical considerations for plant phylogenomics.

Authors:  Michael R McKain; Matthew G Johnson; Simon Uribe-Convers; Deren Eaton; Ya Yang
Journal:  Appl Plant Sci       Date:  2018-04-02       Impact factor: 1.936

6.  PACVr: plastome assembly coverage visualization in R.

Authors:  Michael Gruenstaeudl; Nils Jenke
Journal:  BMC Bioinformatics       Date:  2020-05-24       Impact factor: 3.169

7.  Phylogenomic proof of Recurrent Demipolyploidization and Evolutionary Stalling of the "Triploid Bridge" in Arundo (Poaceae).

Authors:  Wuhe Jike; Mingai Li; Nicola Zadra; Enrico Barbaro; Gaurav Sablok; Giorgio Bertorelle; Omar Rota-Stabelli; Claudio Varotto
Journal:  Int J Mol Sci       Date:  2020-07-24       Impact factor: 5.923

8.  Investigation of mitochondrial-derived plastome sequences in the Paspalum lineage (Panicoideae; Poaceae).

Authors:  Sean V Burke; Mark C Ungerer; Melvin R Duvall
Journal:  BMC Plant Biol       Date:  2018-08-03       Impact factor: 4.215

9.  Comparison of the Complete Eragrostis pilosa Chloroplast Genome with Its Relatives in Eragrostideae (Chloridoideae; Poaceae).

Authors:  Yamuna Somaratne; De-Long Guan; Nibras Najm Abbood; Liang Zhao; Wen-Qiang Wang; Sheng-Quan Xu
Journal:  Plants (Basel)       Date:  2019-11-09
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.