Literature DB >> 21622424

The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features.

Leah M Morris1, Melvin R Duvall.   

Abstract

Features in the complete plastome of Anomochloa marantoidea (Poaceae) were investigated. This species is one of four of Anomochlooideae, the crown node of which diverged before those of any other grass subfamily. The plastome was sequenced from overlapping amplicons using previously designed primers. The plastome of A. marantoidea is 138412 bp long with a typical gene content for Poaceae. Five regions were examined in detail because of prior surveys that identified structural alterations among graminoid Poales. Anomochloa marantoidea was found to have an intron in rpoC1, unlike other Poaceae. The insertion region of rpoC2 is unusually short in A. marantoidea compared with those of other grasses, but with atypically long subrepeats. Both ycf1 and ycf2 are nonfunctional as is typical in grasses, but A. marantoidea has a uniquely long ψycf1. Finally, the rbcL-psaI spacer in A. marantoidea is atypically short with no evidence of the ψrpl23 locus found in all other Poaceae. Some of these features are of noteworthy dissimilarity between A. marantoidea and those crown grasses for which entire plastomes have been sequenced. Complete plastome sequences of other Anomochlooideae and outgroups will further advance our understanding of the evolutionary events in the plastome that accompanied graminoid diversification.

Entities:  

Year:  2010        PMID: 21622424     DOI: 10.3732/ajb.0900226

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  18 in total

1.  Phylogenomics and taxonomy of Lecomtelleae (Poaceae), an isolated panicoid lineage from Madagascar.

Authors:  Guillaume Besnard; Pascal-Antoine Christin; Pierre-Jean G Malé; Eric Coissac; Hélène Ralimanana; Maria S Vorontsova
Journal:  Ann Bot       Date:  2013-08-28       Impact factor: 4.357

2.  Polyphyly of Arundinoideae (Poaceae) and evolution of the twisted geniculate lemma awn.

Authors:  J K Teisher; M R McKain; B A Schaal; E A Kellogg
Journal:  Ann Bot       Date:  2017-11-10       Impact factor: 4.357

3.  Characterization of chloroplast genomes of Alnus rubra and Betula cordifolia, and their use in phylogenetic analyses in Betulaceae.

Authors:  Sung-Il Lee; Kabwe Nkongolo; Doori Park; Ik-Young Choi; Ah-Young Choi; Nam-Soo Kim
Journal:  Genes Genomics       Date:  2018-11-19       Impact factor: 1.839

4.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

5.  High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae).

Authors:  Yun-Jie Zhang; Peng-Fei Ma; De-Zhu Li
Journal:  PLoS One       Date:  2011-05-31       Impact factor: 3.240

6.  A set of 100 chloroplast DNA primer pairs to study population genetics and phylogeny in monocotyledons.

Authors:  Nora Scarcelli; Adeline Barnaud; Wolf Eiserhardt; Urs A Treier; Marie Seveno; Amélie d'Anfray; Yves Vigouroux; Jean-Christophe Pintaud
Journal:  PLoS One       Date:  2011-05-26       Impact factor: 3.240

7.  Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes.

Authors:  Jeffery M Saarela; William P Wysocki; Craig F Barrett; Robert J Soreng; Jerrold I Davis; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin R Mayfield; Melvin R Duvall
Journal:  AoB Plants       Date:  2015-05-04       Impact factor: 3.276

8.  The complete chloroplast genome of banana (Musa acuminata, Zingiberales): insight into plastid monocotyledon evolution.

Authors:  Guillaume Martin; Franc-Christophe Baurens; Céline Cardi; Jean-Marc Aury; Angélique D'Hont
Journal:  PLoS One       Date:  2013-06-28       Impact factor: 3.240

9.  Contradiction between plastid gene transcription and function due to complex posttranscriptional splicing: an exemplary study of ycf15 function and evolution in angiosperms.

Authors:  Chao Shi; Yuan Liu; Hui Huang; En-Hua Xia; Hai-Bin Zhang; Li-Zhi Gao
Journal:  PLoS One       Date:  2013-03-18       Impact factor: 3.240

10.  Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex.

Authors:  Melanie L Hand; German C Spangenberg; John W Forster; Noel O I Cogan
Journal:  G3 (Bethesda)       Date:  2013-04-09       Impact factor: 3.154

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