Literature DB >> 28640660

Chromosome territory relocation paradigm during DNA damage response: Some insights from molecular biology to physics.

Sarosh N Fatakia1, Mugdha Kulashreshtha1, Ishita S Mehta1,2, Basuthkar J Rao1.   

Abstract

Among the many facets of DNA damage response (DDR), relocation of chromosome territories (CTs) is most intriguing. We have previously reported that cisplatin induced DDR in human dermal fibroblasts led to relocation of CTs 12, 15 from the nuclear periphery to its interior while CTs 19, 17 repositioned from the interior to its periphery. Studies of CT relocation remain nascent as we begin unraveling the role of key players in DDR to demonstrate its mechanistic basis. Consolidating our recent reports, we argue that γH2AX-signaling leads to enhanced recruitment of nuclear myosin 1 (NM1) to chromatin, which via its motor function, results in CT repositioning. Next, we invoke a novel systems-level theory that subsumed CTs as pairs, not solo entities, to present the physical basis for plasticity in interphase CT arrangement. Subsequently, we posited that our systems-level theory describes a unified physical basis for non-random positioning of CTs in interphase nuclei across disparate eukaryotes.

Entities:  

Keywords:  3D genome organization; CT relocation; Cisplatin treatment; DDR; DNA damage; NM1 and Induced DNA damage; cell cycle; chromosome territory; serum starvation; unified genome

Mesh:

Substances:

Year:  2017        PMID: 28640660      PMCID: PMC5703250          DOI: 10.1080/19491034.2017.1313938

Source DB:  PubMed          Journal:  Nucleus        ISSN: 1949-1034            Impact factor:   4.197


  47 in total

1.  Dynamics of DNA double-strand breaks revealed by clustering of damaged chromosome domains.

Authors:  Jacob A Aten; Jan Stap; Przemek M Krawczyk; Carel H van Oven; Ron A Hoebe; Jeroen Essers; Roland Kanaar
Journal:  Science       Date:  2004-01-02       Impact factor: 47.728

2.  Influences of chromosome size, gene density and nuclear position on the frequency of constitutional translocations in the human population.

Authors:  Wendy A Bickmore; Peter Teague
Journal:  Chromosome Res       Date:  2002       Impact factor: 5.239

3.  Dynamics of relative chromosome position during the cell cycle.

Authors:  Jeroen Essers; Wiggert A van Cappellen; Arjan F Theil; Ellen van Drunen; Nicolaas G J Jaspers; Jan H J Hoeijmakers; Claire Wyman; Wim Vermeulen; Roland Kanaar
Journal:  Mol Biol Cell       Date:  2004-12-01       Impact factor: 4.138

Review 4.  Genome architecture: domain organization of interphase chromosomes.

Authors:  Wendy A Bickmore; Bas van Steensel
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

Review 5.  Human DNA repair genes, 2005.

Authors:  Richard D Wood; Michael Mitchell; Tomas Lindahl
Journal:  Mutat Res       Date:  2005-09-04       Impact factor: 2.433

6.  Re-modelling of nuclear architecture in quiescent and senescent human fibroblasts.

Authors:  J M Bridger; S Boyle; I R Kill; W A Bickmore
Journal:  Curr Biol       Date:  2000-02-10       Impact factor: 10.834

Review 7.  Conserved domains in DNA repair proteins and evolution of repair systems.

Authors:  L Aravind; D R Walker; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

Review 8.  The emerging role of nuclear architecture in DNA repair and genome maintenance.

Authors:  Tom Misteli; Evi Soutoglou
Journal:  Nat Rev Mol Cell Biol       Date:  2009-03-11       Impact factor: 94.444

9.  Specific nuclear localizing sequence directs two myosin isoforms to the cell nucleus in calmodulin-sensitive manner.

Authors:  Rastislav Dzijak; Sukriye Yildirim; Michal Kahle; Petr Novák; Jarmila Hnilicová; Tomáš Venit; Pavel Hozák
Journal:  PLoS One       Date:  2012-01-25       Impact factor: 3.240

10.  Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.

Authors:  Congmao Wang; Chang Liu; Damian Roqueiro; Dominik Grimm; Rebecca Schwab; Claude Becker; Christa Lanz; Detlef Weigel
Journal:  Genome Res       Date:  2014-11-03       Impact factor: 9.043

View more
  5 in total

Review 1.  Cytoskeletal proteins in the cell nucleus: a special nuclear actin perspective.

Authors:  Piergiorgio Percipalle; Maria Vartiainen
Journal:  Mol Biol Cell       Date:  2019-07-15       Impact factor: 4.138

2.  Inferring chromosome radial organization from Hi-C data.

Authors:  Priyojit Das; Tongye Shen; Rachel Patton McCord
Journal:  BMC Bioinformatics       Date:  2020-11-10       Impact factor: 3.169

Review 3.  Shaping of the 3D genome by the ATPase machine cohesin.

Authors:  Yoori Kim; Hongtao Yu
Journal:  Exp Mol Med       Date:  2020-12-02       Impact factor: 8.718

Review 4.  Genome-wide mapping of genomic DNA damage: methods and implications.

Authors:  Stefano Amente; Giovanni Scala; Barbara Majello; Somaiyeh Azmoun; Helen G Tempest; Sanjay Premi; Marcus S Cooke
Journal:  Cell Mol Life Sci       Date:  2021-08-31       Impact factor: 9.261

5.  Nuclear Envelope Regulation of Oncogenic Processes: Roles in Pancreatic Cancer.

Authors:  Claudia C Preston; Randolph S Faustino
Journal:  Epigenomes       Date:  2018-09-02
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.