| Literature DB >> 28639218 |
Sakina Bechkri1, Imane Medoukali2, Douadi Khelifi2.
Abstract
Genetic variability was studied in 78 populations of locally collected Vicia L. taxa for seed albumins, globulins and prolamins patterns by sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) along with an ecogeographic characterization of sites investigated. 131, 119 and 98 bands were respectively used for albumin, globulin and prolamin cluster analysis. Dendrograms based on the Jaccard index and the UPGMA method were generated and the degree of genetic diversity between and within taxa was evaluated. Five clusters were generated from albumins, six from globulins and four from prolamins patterns. The results reflect the great diversity of storage proteins and a high correlation was obtained between the three studied fractions. Several accessions present specific bands which could be used as a discriminatory marker both on intra and interspecific levels. No clear relationships were seen between the groups according to their geographical origin. Data obtained from ecogeographic investigation can be used for future collecting missions.Entities:
Keywords: Albumins; Ecogeography; Electrophoresis; Globulins; Prolamins; Vicia L.
Year: 2017 PMID: 28639218 PMCID: PMC5479866 DOI: 10.1186/s40529-017-0177-7
Source DB: PubMed Journal: Bot Stud ISSN: 1817-406X Impact factor: 2.787
Fig. 1Geographical origin of the 78 Algerian populations studied
Location and taxonomic identification of accessions investigated
| Species/subspecies | Code | Date of collection | Province/locality/origin | Latitude | Longitude | Altitude (m) | |
|---|---|---|---|---|---|---|---|
|
| 5 | 28.5.14 | Guelma | N36°26.187′ | E007°17.772′ | 339 | |
| 14 | 1.6.14 | Annaba El bouni | N36°49.777′ | E007°38.290′ | 28 | ||
| 36 | 23.5.14 | Béjaia Affalou | N36°40.381′ | E005°08.903′ | 1 | ||
| 59 | 30.5.14 | Jijel | N36°35.082′ | E006°16.728′ | 141 | ||
| 64 | 1.6.14 | Skikda Azzaba | N36°43.532′ | E007°04.706′ | 111 | ||
| 86 | 13.6.14 | Constantine Djbel El Ouehch | N36°23.690′ | E006°39.011′ | 880 | ||
| 65a | 9.6.14 | Tipaza El Beldj Chenoua mountain | N36°37.667′ | E002°21.150′ | 345 | ||
| 52 | 4.6.14 | Blida National parc of Chréa | N36°24.538′ | E002°45.519′ | 249 | ||
| 53 | 30.5.14 | Jijel | – | – | – | ||
| 85 | 1.6.14 | Skikda Ain Charchar | N36°44.366′ | E007°14.176′ | 52 | ||
| 93 | 30.5.14 | Jijel | N36°48.699′ | E005°41.679′ | 25 | ||
|
| 6 | 22.5.14 | Constantine Chaab ersas | N36°20.628′ | E006°37.485′ | 563 | |
| 7 | 30.5.14 | Mila Messaoud Boudjriou | N36°29.743′ | E006°25.527′ | 325 | ||
| 10 | 27.5.14 | Constantine Didouche Mourad | N36°28.409′ | E006°38.239′ | 468 | ||
| 17 | 22.5.14 | Constantine Chaab ersas | N36°20.628′ | E006°37.485′ | 563 | ||
| 20 | 3.6.14 | Sétif Ain arnat | N36°07.394′ | E005°12.172′ | 866 | ||
| 22 | 2.6.14 | Oum El Bouaghi Sigus | N36°04.485′ | E006°48.867′ | 822 | ||
| 28 | 30.5.14 | Jijel | N36°35.094′ | E006°16.732′ | 168 | ||
| 51 | 6.6.14 | Sidi Bel Abbes | N35°10.824′ | W000°36.026′ | 490 | ||
| 32 | 22.5.14 | Constantine Chaab Ersas | N36°20.634′ | E006°37.486′ | 562 | ||
| 57 | 6.6.14 | Tlemcen Ain fezza | N34°52.732′ | W001°13.726′ | 867 | ||
| 61 | 1.6.14 | Annaba Berrahal | N36°49.826′ | E007°29.000′ | 38 | ||
| 68 | 6.6.14 | Ain Temouchent | N35°16.464′ | W001°13.836′ | 281 | ||
| 72 | 28.5.14 | Constantine Ain abid | N36°13.543′ | E006°55.782′ | 847 | ||
| 80 | 28.5.14 | Constantine Ain abid | N36°13.543′ | E006°55.782′ | 847 | ||
| 70 | 28.5.15 | Guelma | N36°14.816′ | E007°03.045′ | 757 | ||
| 83 | 26.5.14 | Batna Ain Touta | N35°17.632′ | E005°49.035′ | 683 | ||
|
| 19 | 18.5.14 | Constantine Chaab Ersas | N36°20.634′ | E006°37.486′ | 562 | |
|
| 8 | 26.5.14 | Biskra El Kantra | N35°11.517′ | E005°40.673′ | 467 | |
| 11 | 6.6.14 | Tlemcen | N35°05.699′ | W001°26.612′ | 90 | ||
| 13 | 26.5.14 | Biskra El Kantra Ain Skhoun | N35°16.087′ | E005°44.174′ | 584 | ||
| 15 | 1.6.14 | Annaba | N36°49.980′ | E007°34.092′ | 24 | ||
| 33 | 29.5.14 | Skikda El hadaik | N36°49.894′ | E006°53.079′ | 26 | ||
| 35 | 1.6.14 | Annaba El bouni | N36°49.777′ | E007°38.290′ | 28 | ||
| 37 | 28.5.14 | Guelma | N36°28.361′ | E007°21.280′ | 223 | ||
| 38 | 10.5.14 | Jijel | N36°49.348′ | E005°56.706′ | 14 | ||
| 42 | 28.5.14 | Constantine Ain Abid | N36°13.543′ | E006°55.782′ | 847 | ||
| 47 | 22.5.14 | Constantine University | N36°20.387′ | E006°37.177′ | 604 | ||
| 71 | 30.5.14 | Jijel | N36°47.625′ | E005°39.746′ | 17 | ||
|
| |||||||
| | 1 | 28.5.14 | Skikda Ramdane Djamel | N36°45.977′ | E006°53.432′ | 42 | |
| 4 | 22.5.14 | Constantine University | N36°20.387′ | E006°37.177′ | 604 | ||
| 58 | 27.5.14 | Constantine Didouche Mourad | N36°30.025′ | E006°40.058′ | 448 | ||
| V. | 62 | 1.6.14 | Skikda Azzaba | N36°43.531′ | E007°04.708′ | 110 | |
| 63 | 1.6.14 | Skikda Ain Cherchar | N36°44.366′ | E007°14.176′ | 52 | ||
| 79 | 1.6.14 | El Tarf Ben M’hidi | N36°46.402′ | E007°53.600′ | 11 | ||
| 87 | 30.5.14 | Jijel El Milia | N36°46.668′ | E006°13.551′ | 28 | ||
| 90 | 1st.6.14 | Annaba | N36°49.980′ | E007°34.092′ | 24 | ||
| 88 | 30.5.14 | Jijel El Ansar | N36°48.661′ | E006°08.016′ | 30 | ||
| 3 | 2.6.14 | Oum El Bouaghi Sigus | N36°04.485′ | E006°48.867′ | 822 | ||
| 12 | 5.6.14 | Relizane | N35°43.689′ | E000°24.265′ | 105 | ||
| 26 | 28.5.15 | Guelma | N36°14.816′ | E007°03.045′ | 757 | ||
| 27 | 2.6.14 | Oum El Bouaghi | N35°51.459′ | E007°06.377′ | 887 | ||
| 40 | 28.5.14 | Guelma | N36°16.276′ | E007°05.751′ | 711 | ||
| 44 | 6.6.14 | Tlemcen | N34°52.088′ | W001°11.698′ | 843 | ||
|
| |||||||
| | 45 | 3.6.14 | Bordj Bou Areridj | N36°04.070′ | E004°41.899′ | 923 | |
| 49 | 28.5.14 | Constantine Ain Abid | N36°13.543′ | E006°55.782′ | 847 | ||
| 60 | 2.6.14 | Khenchla | N35°33.685′ | E007°02.177′ | 860 | ||
| 74 | 14.6.14 | Tébessa | N35°15.936′ | E007°30.306′ | 1078 | ||
| 77 | 26.5.14 | Batna Ain Touta | N35°17.632′ | E005°49.035′ | 683 | ||
| 78 | 20.5.14 | Constantine Coudiat | N36°21.787′ | E006°36.418′ | 633 | ||
| 84 | 10.6.14 | Constantine INATAA | N36°19.002′ | E006°34.626′ | 586 | ||
| 29 | 2.6.14 | Oum El Bouaghi Sigus | N36°04.485′ | E006°48.867′ | 822 | ||
| 18 | 3.6.14 | Bordj Bou Areridj Ain taghrout | N36°07.741′ | E005°03.364′ | 934 | ||
| 98 | 14.6.14 | Tébessa Chria | N35°16.328′ | E007°44.359′ | 1087 | ||
| 102 | Constantine University | N36°20.387′ | E006°37.177′ | 604 | |||
| 43 | 4.6.14 | Médéa Oued Harbil | N36°13.633′ | E002°37.643′ | 464 | ||
| | 46 | 3.6.14 | Bordj Bou Areridj El Achir | N36°04.017′ | E004°40.525′ | 944 | |
| 91 | 14.6.14 | Khenchla | N35°15.704′ | E007°20.957′ | 1222 | ||
|
| |||||||
| – | 23 | 30.5.14 | Constantine Hamma Bouziane (Chaabet El Medhbouh) | N36°26.391′ | E006°33.282′ | 425 | |
| 30 | 30.5.14 | Mila Messaoud Boudjriou | N36°29.748′ | E006°25.530′ | 325 | ||
| 34 | 27.4.14 | Constantine Didouche Mourad | N36°29.216′ | E006°38.731′ | 434 | ||
| 41 | 28.5.14 | Guelma | N36°16.276′ | E007°05.751′ | 711 | ||
| 55 | 27.5.14 | Constantine Didouche Mourad | N36°30.023′ | E006°40.051′ | 443 | ||
| 66 | 28.5.14 | Guelma | N36°19.930 | E007°12.447′ | 698 | ||
| 81 | 22.5.14 | Constantine University | N36°20.387′ | E006°37.177′ | 604 | ||
|
| |||||||
| – | 56 | 6.6.14 | Ain Temouchent | N35°16.476′ | W001°13.800′ | 276 | |
| 89 | 6.6.14 | Sidi Bel Abbes Sidi Khaled | N35°06.59′ | W000°44.238′ | 543 | ||
|
| |||||||
| – | 100 | 10.6.14 | Constantine INATAA | N36°19.002′ | E006°34.626′ | 586 | |
Climatic characteristics of reference stations (2004–2014)
| Reference station | Latitude | Longitude | Alt. (m) | P (mm) | m (°C) | M (°C) |
|---|---|---|---|---|---|---|
| Jijel (airport) | 36°48N | 05°53E | 8 | 1066.1 | 6.8 | 31.5 |
| Skikda | 36°53N | 06°54E | 2 | 829 | 8.8 | 29 |
| Annaba | 36°50N | 07°48E | 3 | 684.4 | 6.7 | 31.5 |
| Béjaia | 36°43N | 05°04E | 2 | 833 | 7.4 | 30.7 |
| Constantine | 36°17N | 06°37E | 693 | 486.6 | 2.2 | 35.2 |
| Milaa | 36°27N | 06°16E | 437 | 742 | 4.4 | 31.5 |
| Sétif (Ain Arnat) | 36°10N | 05°19E | 1007 | 401.8 | −2 | 34.8 |
| Oum El Bouaghi | 35°52N | 07°07E | 889 | 410.4 | 1.1 | 35 |
| Tlemcen (zenata) | 35°01N | 01°28W | 246 | 359.8 | 6.2 | 33.9 |
| Ain Temouchenta | 35°17N | 01°08W | 235 | 485 | 6.8 | 30.2 |
| Biskra | 34°48N | 05°44E | 82 | 143 | 6.9 | 41.3 |
| Guelma | 36°28N | 07°28E | 227 | 622.3 | 4.5 | 36.4 |
| Sidi Bel Abbes | 35°12N | 00°37W | 475 | 375.1 | 2.8 | 36 |
| Tipaza El Beldja | 36°38N | 02°21E | 22 | 631 | 8.4 | 30.8 |
| Blidaa | 36°27N | 02°.44 | 1458 | 916 | −0.9 | 28.5 |
| Relizane | 35°44N | 00°32E | 95 | 352.5 | 5.3 | 38.6 |
| Bordj Bou Arerridj | 36°04N | 04°46E | 928 | 392.9 | 1.7 | 36.4 |
| Khenchla | 35°28N | 07°05E | 983 | 520.8 | 1.8 | 34.9 |
| Tébessa | 35°25N | 08°07E | 821 | 382.6 | 1.7 | 35.6 |
| Batna | 35°45N | 06°19E | 822 | 346.8 | 0.1 | 36.4 |
| Milaa | 36°27N | 06°16E | 437 | 742 | 4.4 | 31.5 |
| Ain Temouchenta | 35°17N | 01°08W | 235 | 485 | 6.8 | 30.2 |
| El Tarf Ben M’hidia | 36°46N | 07°54E | 6 | 707 | 7.1 | 31.2 |
| Médéa | 36°17N | 02°44E | 1030 | 780 | 3.5 | 32.5 |
Alt altitude, P annual rainfall, M and m are the average maximum temperature of the hottest month and the average of the minimum of the coldest month, respectively
aData from “http://climate-data.org”
Corrected climatic data and Emberger quotient calculation of sampling sites of accessions studied
| Station code | Alt. (m) | K | P (mm) | m (°C) | M (°C) | Q2 | Bioclimate |
|---|---|---|---|---|---|---|---|
| 5 | 339 | 1.0719 | 667.04 | 4.05 | 35.71 | 72.25 | SH-temperate winter |
| 14 | 28 | 1.0292 | 704.38 | 6.6 | 31.32 | 97.71 | SH-mild winter |
| 36 | 1 | 0.9990 | 832.16 | 7.40 | 30.70 | 122.48 | SH-warm winter |
| 59 | 141 | 1.0998 | 1172.49 | 6.26 | 30.56 | 165.49 | LH-mild winter |
| 64 | 111 | 1.1051 | 916.12 | 8.36 | 28.93 | 152.73 | LH-warm winter |
| 86 | 880 | 1.1537 | 561.39 | 1.45 | 33.89 | 59.35 | HSA-cool winter |
| 65a | 345 | 1.4095 | 889.39 | 7.10 | 28.53 | 142.34 | LH-warm winter |
| 52 | 249 | 0.4720 | 432.35 | 3.93 | 36.96 | 44.90 | MSA-temperate winter |
| 93 | 25 | 1.0127 | 1079.63 | 6.73 | 31.38 | 150.23 | LH-mild winter |
| 6 | 563 | 1.1068 | 538.56 | 2.72 | 36.11 | 55.32 | HSA-ool winter |
| 7 | 325 | 0.9396 | 697.18 | 4.84 | 32.28 | 87.16 | SH-mild winter |
| 10 | 468 | 0.8150 | 396.57 | 3.1 | 36.77 | 40.39 | MSA-temperate winter |
| 17 | 563 | 1.1068 | 538.56 | 2.72 | 36.11 | 55.32 | HSA-cool winter |
| 20 | 866 | 0.8596 | 345.38 | 1.43 | 35.78 | 34.48 | LSA-cool winter |
| 22 | 822 | 0.9346 | 383.55 | 1.36 | 33.40 | 39.38 | MSA-cool winter |
| 28 | 168 | 1.1200 | 1194.03 | 6.16 | 30.38 | 169.09 | LH-mild winter |
| 32 | 562 | 1.1076 | 538.95 | 2.72 | 36.11 | 55.35 | HSA-cool winter |
| 51 | 490 | 1.0159 | 381.06 | 2.74 | 35.89 | 39.42 | MSA-cool winter |
| 57 | 867 | 1.6903 | 608.16 | 3.71 | 29.55 | 80.73 | SH-temperate winter |
| 61 | 38 | 1.0409 | 712.39 | 6.56 | 31.25 | 98.94 | SH-cool winter |
| 68 | 281 | 1.0379 | 503.38 | 6.61 | 29.87 | 74.22 | SH-mild winter |
| 72 | 782 | 1.0731 | 522.17 | 1.84 | 34.57 | 54.71 | HSA-cool winter |
| 80 | 782 | 1.0731 | 522.17 | 1.84 | 34.57 | 54.71 | HSA-cool winter |
| 70 | 757 | 1.3406 | 834.25 | 0.79 | 32.79 | 89.42 | SH cold winter |
| 83 | 683 | 0.8396 | 291.17 | 0.65 | 37.37 | 27.20 | HA-cold winter |
| 19 | 562 | 1.1076 | 538.95 | 2.72 | 36.11 | 55.35 | HSA-cool winter |
| 8 | 467 | 2.0769 | 296.99 | 5.36 | 38.60 | 30.64 | HA-mild winter |
| 11 | 90 | 0.8265 | 297.37 | 6.82 | 34.99 | 36.21 | HA-mild winter |
| 13 | 584 | 2.4041 | 343.78 | 4.89 | 37.78 | 35.84 | HA-mild winter |
| 15 | 24 | 1.0245 | 701.16 | 6.61 | 31.35 | 97.22 | SH-mild winter |
| 33 | 26 | 1.0231 | 848.14 | 8.70 | 29.53 | 139.67 | SH-warm winter |
| 35 | 28 | 1.0292 | 704.38 | 6.6 | 31.32 | 97.71 | SH-mild winter |
| 37 | 223 | 1.0025 | 611.62 | 4.51 | 36.52 | 65.53 | SA-mild winter |
| 38 | 14 | 1.0045 | 1070.9 | 6.77 | 31.45 | 148.82 | LH-mild winter |
| 42 | 847 | 1.1265 | 548.15 | 1.58 | 34.12 | 57.78 | HSA-cool winter |
| 47 | 604 | 0.9268 | 450.98 | 2.55 | 35.82 | 46.49 | HSA-cool winter |
| 71 | 17 | 1.0067 | 1108.4 | 6.76 | 31.43 | 154.13 | LH-mild winter |
| 85 | 52 | 1.0482 | 868.95 | 8.6 | 28.65 | 148.65 | LH-warm winter |
| 1 | 42 | 1.0386 | 860.99 | 8.64 | 28.72 | 147.07 | LH-warm winter |
| 4 | 604 | 0.9268 | 450.98 | 2.55 | 35.82 | 46.49 | HSA-cool winter |
| 58 | 448 | 0.7986 | 388.59 | 3.18 | 36.91 | 39.52 | MSA-temperate winter |
| 62 | 110 | 1.1042 | 701.16 | 8.36 | 28.24 | 120.97 | SH-warm winter |
| 63 | 52 | 1.0482 | 868.95 | 8.6 | 28.65 | 148.65 | LH-warm winter |
| 79 | 11 | 1.0056 | 710.93 | 7.08 | 31.16 | 101.27 | SH-warm winter |
| 87 | 28 | 1.0150 | 1082.09 | 6.72 | 31.36 | 150.63 | LH-mild winter |
| 90 | 24 | 1.0245 | 701.16 | 6.61 | 31.35 | 97.21 | SH-mild winter |
| 88 | 30 | 1.0165 | 1083.69 | 6.71 | 31.34 | 150.91 | LH-mild winter |
| 3 | 822 | 0.9346 | 383.56 | 1.36 | 35.46 | 38.58 | MSA-cool winter |
| 12 | 105 | 1.0113 | 356.48 | 5.26 | 38.53 | 36.75 | LSA-mild winter |
| 26 | 755 | 1.3393 | 833.44 | 2.38 | 32.80 | 93.97 | SH-cool winter |
| 27 | 887 | 0.9980 | 409.57 | 1.108 | 35.014 | 41.43 | MSA-cool winter |
| 40 | 711 | 1.3111 | 815.89 | 2.56 | 32.80 | 92.54 | SH-cool winter |
| 44 | 843 | 2.3274 | 837.39 | 3.81 | 29.72 | 110.85 | LH-temperate winter |
| 45 | 923 | 0.9949 | 390.89 | 1.72 | 36.43 | 38.63 | MSA-cool winter |
| 49 | 847 | 1.1265 | 548.15 | 1.58 | 34.12 | 57.78 | HSA-cool winter |
| 60 | 860 | 0.9055 | 471.58 | 2.29 | 35.76 | 48.33 | HSA-cool winter |
| 74 | 1078 | 1.2686 | 485.36 | 0.67 | 33.80 | 50.25 | HSA-cold winter |
| 77 | 683 | 0.8396 | 291.17 | 0.65 | 37.37 | 27.20 | HA-cold winter |
| 78 | 633 | 0.9506 | 462.56 | 2.44 | 35.62 | 47.82 | HSA-cool winter |
| 84 | 586 | 0.9120 | 466.85 | 2.62 | 35.94 | 48.06 | HSA-cool winter |
| 98 | 1087 | 1.2780 | 488.96 | 0.63 | 33.73 | 50.67 | HSA-cold winter |
| 102 | 604 | 0.9268 | 450.98 | 2.55 | 35.82 | 46.49 | HSA-cool winter |
| 43 | 464 | 0.7097 | 553.56 | 5.76 | 36.46 | 77.08 | SH-mild winter |
| 29 | 822 | 0.9346 | 383.56 | 1.36 | 35.46 | 38.58 | MSA-cool winter |
| 18 | 934 | 1.0061 | 395.29 | 1.67 | 36.35 | 39.10 | MSA-cool winter |
| 46 | 944 | 1.0162 | 399.26 | 1.63 | 36.28 | 39.52 | MSA-cool winter |
| 91 | 1222 | 1.1835 | 616.36 | 0.84 | 33.22 | 65.29 | SH-cold winter |
| 23 | 425 | 0.7796 | 379.35 | 2.62 | 35.94 | 39.05 | MSA-cool winter |
| 30 | 325 | 0.9396 | 697.18 | 4.84 | 32.28 | 87.15 | SH-mild winter |
| 34 | 434 | 0.7870 | 382.95 | 3.23 | 37.01 | 38.88 | MSA-temperate winter |
| 41 | 711 | 1.3111 | 815.89 | 2.56 | 33.12 | 91.58 | SH-cool winter |
| 55 | 443 | 0.7944 | 386.55 | 3.2 | 36.95 | 39.28 | MSA-temperate winter |
| 66 | 698 | 1.4 | 871.22 | 2.61 | 33.20 | 97.68 | SH-cool winter |
| 81 | 604 | 0.9268 | 450.98 | 2.55 | 35.82 | 46.49 | HSA-cool winter |
| 56 | 276 | 1.0338 | 501.38 | 6.63 | 29.91 | 73.87 | SH-mild winter |
| 89 | 543 | 1.0725 | 402.29 | 2.52 | 35.52 | 41.81 | MSA-cool winter |
| 100 | 586 | 0.912 | 466.85 | 2.62 | 35.94 | 48.06 | HSA-cool winter |
K correction factor, Alt altitude, P annual rainfall, M and m the average maximum temperature of the hottest month and the average of the minimum of the coldest month, respectively, Q2 Emberger coefficient, SH subhumid, LH less humid, HSA higher semiarid, HA higher arid, MSA means semiarid, LSA less semiarid, SA semiarid
Fig. 2Electrophoretic banding pattern generated by SDS-PAGE of seed storage proteins of some Vicia accessions studied. M marker, a globulins, b prolamins, c albumins
Fig. 3Dendrograms generated using UPGMA cluster analysis and Jaccard’s index based on seed proteins diversity of 78 Vicia accessions. a Albumins, b globulins, c prolamins
Fig. 4Dendrogram generated using UPGMA cluster analysis and Euclidean distances based on ecogeographic characterization of sites investigated