Literature DB >> 28630026

What have we learned on aging from omics studies?

Alessandro Cellerino1, Alessandro Ori2.   

Abstract

Aging is a complex process. Transcriptomic studies of the last decade have identified genes and pathways that are regulated during aging in multiple species and organs. Yet, since a manifold of pathways are regulated and the amplitude of regulation is often small, reproducibility across studies is moderate and disentangling cause-consequence relationships has proven challenging. Here, we review a number of consistent findings in the light of more recent, longitudinal studies and of studies combining transcriptomics and proteomics that identified deregulation of protein biosynthetic pathways as an early event and likely driver of aging.
Copyright © 2017 Elsevier Ltd. All rights reserved.

Keywords:  Aging; Data integration; Genomics; Killifish; Lysosome; Mitochondria; Nothobranchius furzeri; Pathways; Proteasome; Protein complex; Proteomics; Proteostasis; RNAseq; Ribosome; Stoichiometry; Transcriptomics

Mesh:

Substances:

Year:  2017        PMID: 28630026     DOI: 10.1016/j.semcdb.2017.06.012

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  23 in total

1.  Loss of metabolic plasticity underlies metformin toxicity in aged Caenorhabditis elegans.

Authors:  Lilia Espada; Alexander Dakhovnik; Prerana Chaudhari; Asya Martirosyan; Laura Miek; Tetiana Poliezhaieva; Yvonne Schaub; Ashish Nair; Nadia Döring; Norman Rahnis; Oliver Werz; Andreas Koeberle; Joanna Kirkpatrick; Alessandro Ori; Maria A Ermolaeva
Journal:  Nat Metab       Date:  2020-11-02

2.  Multiomic profiling of the liver across diets and age in a diverse mouse population.

Authors:  Evan G Williams; Niklas Pfister; Suheeta Roy; Cyril Statzer; Jack Haverty; Jesse Ingels; Casey Bohl; Moaraj Hasan; Jelena Čuklina; Peter Bühlmann; Nicola Zamboni; Lu Lu; Collin Y Ewald; Robert W Williams; Ruedi Aebersold
Journal:  Cell Syst       Date:  2021-10-18       Impact factor: 10.304

3.  Reduced expression of C/EBPβ-LIP extends health and lifespan in mice.

Authors:  Christine Müller; Laura M Zidek; Tobias Ackermann; Tristan de Jong; Peng Liu; Verena Kliche; Mohamad Amr Zaini; Gertrud Kortman; Liesbeth Harkema; Dineke S Verbeek; Jan P Tuckermann; Julia von Maltzahn; Alain de Bruin; Victor Guryev; Zhao-Qi Wang; Cornelis F Calkhoven
Journal:  Elife       Date:  2018-06-04       Impact factor: 8.140

4.  Reduced proteasome activity in the aging brain results in ribosome stoichiometry loss and aggregation.

Authors:  Erika Kelmer Sacramento; Joanna M Kirkpatrick; Mariateresa Mazzetto; Mario Baumgart; Aleksandar Bartolome; Simone Di Sanzo; Cinzia Caterino; Michele Sanguanini; Nikoletta Papaevgeniou; Maria Lefaki; Dorothee Childs; Sara Bagnoli; Eva Terzibasi Tozzini; Domenico Di Fraia; Natalie Romanov; Peter H Sudmant; Wolfgang Huber; Niki Chondrogianni; Michele Vendruscolo; Alessandro Cellerino; Alessandro Ori
Journal:  Mol Syst Biol       Date:  2020-06       Impact factor: 11.429

5.  Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging.

Authors:  Ivonne Heinze; Martin Bens; Enrico Calzia; Susanne Holtze; Oleksandr Dakhovnik; Arne Sahm; Joanna M Kirkpatrick; Karol Szafranski; Natalie Romanov; Sai Nagender Sama; Kerstin Holzer; Stephan Singer; Maria Ermolaeva; Matthias Platzer; Thomas Hildebrandt; Alessandro Ori
Journal:  BMC Biol       Date:  2018-08-02       Impact factor: 7.431

6.  Naked mole-rat transcriptome signatures of socially suppressed sexual maturation and links of reproduction to aging.

Authors:  Martin Bens; Karol Szafranski; Susanne Holtze; Arne Sahm; Marco Groth; Hans A Kestler; Thomas B Hildebrandt; Matthias Platzer
Journal:  BMC Biol       Date:  2018-08-02       Impact factor: 7.431

Review 7.  Hallmarks of Aging in the Liver.

Authors:  Nicholas J Hunt; Sun Woo Sophie Kang; Glen P Lockwood; David G Le Couteur; Victoria C Cogger
Journal:  Comput Struct Biotechnol J       Date:  2019-08-07       Impact factor: 7.271

Review 8.  From molecular promise to preclinical results: HDAC inhibitors in the race for healthy aging drugs.

Authors:  Rebecca L McIntyre; Eileen G Daniels; Marte Molenaars; Riekelt H Houtkooper; Georges E Janssens
Journal:  EMBO Mol Med       Date:  2019-08-01       Impact factor: 12.137

9.  Genome-wide transcript and protein analysis highlights the role of protein homeostasis in the aging mouse heart.

Authors:  Isabela Gerdes Gyuricza; Joel M Chick; Gregory R Keele; Andrew G Deighan; Steven C Munger; Ron Korstanje; Steven P Gygi; Gary A Churchill
Journal:  Genome Res       Date:  2022-03-11       Impact factor: 9.438

10.  Quantifying compartment-associated variations of protein abundance in proteomics data.

Authors:  Luca Parca; Martin Beck; Peer Bork; Alessandro Ori
Journal:  Mol Syst Biol       Date:  2018-07-02       Impact factor: 11.429

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