Literature DB >> 28629859

S-adenosyl-L-homocysteine hydrolase from a hyperthermophile (Thermotoga maritima) is expressed in Escherichia coli in inactive form - Biochemical and structural studies.

Krzysztof Brzezinski1, Justyna Czyrko2, Joanna Sliwiak3, Edyta Nalewajko-Sieliwoniuk2, Mariusz Jaskolski4, Boguslaw Nocek5, Zbigniew Dauter6.   

Abstract

Thermotoga maritima is a hyperthermophilic bacterium but its genome encodes a number of archaeal proteins including S-adenosyl-L-homocysteine hydrolase (SAHase), which regulates cellular methylation reactions. The question of proper folding and activity of proteins of extremophilic origin is an intriguing problem. When expressed in E.coli and purified (as a homotetramer) at room temperature, the hyperthermophilic SAHase from T.maritima was inactive. ITC study indicated that the protein undergoes heat-induced conformational changes, and enzymatic activity assays demonstrated that these changes are required to attain enzymatic activity. To explain the mechanism of thermal activation, two crystal structures of the inactive form of T. maritima SAHase (iTmSAHase) were determined for an incomplete binary complex with the reduced cofactor (NADH), and in a mixture of binary complexes with NADH and with adenosine. In contrast to active SAHases, in iTmSAHase only two of the four subunits contain a bound cofactor, predominantly in its non-reactive, reduced state. Moreover, the closed-like conformation of the cofactor-containing subunits precludes substrate delivery to the active site. The two other subunits cannot be involved in the enzymatic reaction either; although they have an open-like conformation, they do not contain the cofactor, whose binding site may be occupied by an adenosine molecule. The results suggest that this enzyme, when expressed in mesophilic cells, is arrested in the activity-incompatible conformation revealed by its crystal structures.
Copyright © 2017 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cellular methylation; Heat-induced activation; X-ray crystallography

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Substances:

Year:  2017        PMID: 28629859      PMCID: PMC7888557          DOI: 10.1016/j.ijbiomac.2017.06.065

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  45 in total

1.  In vitro heat effect on heterooligomeric subunit assembly of thermostable indolepyruvate ferredoxin oxidoreductase.

Authors:  M A Siddiqui; S Fujiwara; M Takagi; T Imanaka
Journal:  FEBS Lett       Date:  1998-09-04       Impact factor: 4.124

2.  Effect of heat treatment on proper oligomeric structure formation of thermostable glutamate dehydrogenase from a hyperthermophilic archaeon.

Authors:  R N Abd Rahman; S Fujiwara; M Takagi; S Kanaya; T Imanaka
Journal:  Biochem Biophys Res Commun       Date:  1997-12-29       Impact factor: 3.575

Review 3.  Biological effects of inhibitors of S-adenosylhomocysteine hydrolase.

Authors:  P K Chiang
Journal:  Pharmacol Ther       Date:  1998-02       Impact factor: 12.310

4.  Mechanism of inactivation of S-adenosylhomocysteine hydrolase by (Z)-4',5'-didehydro-5'-deoxy-5'-fluoroadenosine.

Authors:  C S Yuan; J Yeh; S Liu; R T Borchardt
Journal:  J Biol Chem       Date:  1993-08-15       Impact factor: 5.157

5.  Effects of site-directed mutagenesis on structure and function of recombinant rat liver S-adenosylhomocysteine hydrolase. Crystal structure of D244E mutant enzyme.

Authors:  J Komoto; Y Huang; T Gomi; H Ogawa; Y Takata; M Fujioka; F Takusagawa
Journal:  J Biol Chem       Date:  2000-10-13       Impact factor: 5.157

6.  Catalytic mechanism of S-adenosylhomocysteine hydrolase. Site-directed mutagenesis of Asp-130, Lys-185, Asp-189, and Asn-190.

Authors:  Yoshimi Takata; Taro Yamada; Yafei Huang; Junichi Komoto; Tomoharu Gomi; Hirofumi Ogawa; Motoji Fujioka; Fusao Takusagawa
Journal:  J Biol Chem       Date:  2002-04-01       Impact factor: 5.157

7.  Crystal structures of Mycobacterium tuberculosis S-adenosyl-L-homocysteine hydrolase in ternary complex with substrate and inhibitors.

Authors:  Manchi C M Reddy; Gokulan Kuppan; Nishant D Shetty; Joshua L Owen; Thomas R Ioerger; James C Sacchettini
Journal:  Protein Sci       Date:  2008-09-24       Impact factor: 6.725

8.  Expression and in vitro assembly of recombinant glutamate dehydrogenase from the hyperthermophilic archaeon Pyrococcus furiosus.

Authors:  J Diruggiero; F T Robb
Journal:  Appl Environ Microbiol       Date:  1995-01       Impact factor: 4.792

9.  REFMAC5 for the refinement of macromolecular crystal structures.

Authors:  Garib N Murshudov; Pavol Skubák; Andrey A Lebedev; Navraj S Pannu; Roberto A Steiner; Robert A Nicholls; Martyn D Winn; Fei Long; Alexei A Vagin
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Structural insights into the reaction mechanism of S-adenosyl-L-homocysteine hydrolase.

Authors:  Yoshio Kusakabe; Masaaki Ishihara; Tomonobu Umeda; Daisuke Kuroda; Masayuki Nakanishi; Yukio Kitade; Hiroaki Gouda; Kazuo T Nakamura; Nobutada Tanaka
Journal:  Sci Rep       Date:  2015-11-17       Impact factor: 4.379

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  2 in total

1.  Metal-cation regulation of enzyme dynamics is a key factor influencing the activity of S-adenosyl-L-homocysteine hydrolase from Pseudomonas aeruginosa.

Authors:  Justyna Czyrko; Joanna Sliwiak; Barbara Imiolczyk; Zofia Gdaniec; Mariusz Jaskolski; Krzysztof Brzezinski
Journal:  Sci Rep       Date:  2018-07-27       Impact factor: 4.379

2.  S-Adenosyl-L-Homocysteine Hydrolase Inhibition by a Synthetic Nicotinamide Cofactor Biomimetic.

Authors:  Lyn L Kailing; Daniela Bertinetti; Caroline E Paul; Tomasz Manszewski; Mariusz Jaskolski; Friedrich W Herberg; Ioannis V Pavlidis
Journal:  Front Microbiol       Date:  2018-03-21       Impact factor: 5.640

  2 in total

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