Literature DB >> 28629498

Rodentibacter gen. nov. including Rodentibacter pneumotropicus comb. nov., Rodentibacter heylii sp. nov., Rodentibacter myodis sp. nov., Rodentibacter ratti sp. nov., Rodentibacter heidelbergensis sp. nov., Rodentibacter trehalosifermentans sp. nov., Rodentibacter rarus sp. nov., Rodentibacter mrazii and two genomospecies.

Sadhana Adhikary1, Werner Nicklas2, Magne Bisgaard3, Ron Boot4, Peter Kuhnert5, Torsten Waberschek2, Bent Aalbæk1, Bozena Korczak5, Henrik Christensen1.   

Abstract

Rodentibacter gen. nov. is proposed based on isolation and phenotypic characterization of strains, predominantly from rodents. The strains showed 86 % or higher rpoB gene sequence similarity and indicated a genus-level relationship within Pasteurellaceae. The strains compared at 16S rRNA gene sequence level showed 93.8 % or higher similarity, and their genus-level relationship within Pasteurellaceae was confirmed by phenotypic analysis. The type species Rodentibacter pneumotropicus comb. nov. is reclassified from [Pasteurella] pneumotropica with type strain NCTC 8141T (=CCUG 12398T). Whole genomic comparison allowed the estimation of DNA-DNA renaturation. Rodentibacter heylii sp. nov. was proposed for a group that included the biovar Heyl of [Pasteurella] pneumotropica with the type strain ATCC 12555T (=CCUG 998T). A group was proposed as Rodentibacter ratti sp. nov., which included the taxon 22 of Bisgaard; the type strain is F75T (=CCUG 69665T=DSM 103977T). Taxon 41 of Bisgaard was proposed as Rodentibacter myodis sp. nov. with type strain Ac151T (=CCUG 69666T=DSM 103994T). Rodentibacter heidelbergensis sp. nov. included the type strain 1996025094T (=Ac69T) (=CCUG 69667T=DSM 103978T). A group strains of was proposed as Rodentibacter trehalosifermentans sp. nov. with type strain H1987082031T (=CCUG 69668T=DSM 104075T). Two strains including the reference strain of taxon 17 of Bisgaard that showed 16S rRNA gene similarity of 97.3 % were proposed as Rodentibacter rarus sp. nov. 2325/79T (=CCUG 17206T=DSM 103980T). Rodentibacter mrazii sp. nov. was proposed with type strain Ppn418T (Bisgaard taxon 21) (=CCUG 69669T=DSM 103979T). The eight species could be separated based on phenotypic characteristics such as NAD requirement, ornithine decarboxylase and indole formation, α-glucosidase, β-galactosidase and in acid formation from (+)-l-arabinose, (-)-d-ribose, (+)-d-xylose, myo-inositol, (-)-d-mannitol, lactose, melibiose and trehalose. Forty-six strains including taxon 48 of Bisgaard formed a monophyletic group by rpoB and 16S rRNA gene sequence analysis, but could not be separated phenotypically from R. pneumotropicus and R. heylii, and it was left as an unnamed genomospecies 1 of Rodentibacter with reference strain Ppn416. Another taxon that included 13 strains, mainly isolated from Apodemus sylvaticus, could not be separated phenotypically from R. pneumotropicus or R. heylii and was designated as genomospecies 2. Strain Ppn85 with 95 % or less rpoB gene sequence similarity and with 16S rRNA gene sequence similarity of 97 % or less to the other members of Rodentibacter was left as an unnamed singleton.

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Year:  2017        PMID: 28629498     DOI: 10.1099/ijsem.0.001866

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  12 in total

1.  Current Distribution of Rodentibacter Species Among the Mice and Rats of an Experimental Facility.

Authors:  Laurentiu Benga; Jeanette I Knorr; Eva Engelhardt; Christina Gougoula; Peter M Benten; Henrik Christensen; Martin Sager
Journal:  J Am Assoc Lab Anim Sci       Date:  2019-06-25       Impact factor: 1.232

Review 2.  An Update on the Novel Genera and Species and Revised Taxonomic Status of Bacterial Organisms Described in 2016 and 2017.

Authors:  Erik Munson; Karen C Carroll
Journal:  J Clin Microbiol       Date:  2019-01-30       Impact factor: 5.948

3.  The Likelihood of Misidentifying Rodent Pasteurellaceae by Using Results from a Single PCR Assay.

Authors:  Hagit Dafni; Lea Greenfeld; Roni Oren; Alon Harmelin
Journal:  J Am Assoc Lab Anim Sci       Date:  2019-01-16       Impact factor: 1.232

4.  Differentiation Among Rodentibacter Species Based on 16S-23S rRNA Internal Transcribed Spacer Analysis.

Authors:  Laurentiu Benga; Peter M Benten; Eva Engelhardt; Karl Köhrer; Barbara Hueber; Werner Nicklas; Henrik Christensen; Martin Sager
Journal:  Comp Med       Date:  2020-10-29       Impact factor: 0.982

5.  Comparative analysis of humoral immune responses and pathologies of BALB/c and C57BL/6 wildtype mice experimentally infected with a highly virulent Rodentibacter pneumotropicus (Pasteurella pneumotropica) strain.

Authors:  Juliane Fornefett; Jaqueline Krause; Kristin Klose; Felix Fingas; Rayk Hassert; Laurentiu Benga; Thomas Grunwald; Uwe Müller; Wieland Schrödl; Christoph Georg Baums
Journal:  BMC Microbiol       Date:  2018-05-30       Impact factor: 3.605

6.  Polyphyly in 16S rRNA-based LVTree Versus Monophyly in Whole-genome-based CVTree.

Authors:  Guanghong Zuo; Ji Qi; Bailin Hao
Journal:  Genomics Proteomics Bioinformatics       Date:  2018-12-11       Impact factor: 7.691

7.  Sensitive and immunogen-specific serological detection of Rodentibacter pneumotropicus infections in mice.

Authors:  Felix Fingas; Daniela Volke; Rayk Hassert; Juliane Fornefett; Sophie Funk; Christoph Georg Baums; Ralf Hoffmann
Journal:  BMC Microbiol       Date:  2019-02-18       Impact factor: 3.605

8.  Detection of mammalian orthoreovirus type-3 (Reo-3) infections in mice based on serotype-specific hemagglutination protein sigma-1.

Authors:  Felix Fingas; Daniela Volke; Petra Bielefeldt; Rayk Hassert; Ralf Hoffmann
Journal:  Virol J       Date:  2018-07-27       Impact factor: 4.099

9.  The Oral Mouse Microbiome Promotes Tumorigenesis in Oral Squamous Cell Carcinoma.

Authors:  Philip Stashenko; Susan Yost; Yoonhee Choi; Theodora Danciu; Tsute Chen; Subbiah Yoganathan; Christine Kressirer; Montserrat Ruiz-Tourrella; Bikul Das; Alexis Kokaras; Jorge Frias-Lopez
Journal:  mSystems       Date:  2019-08-06       Impact factor: 6.496

10.  Fatal progression of experimental visceral leishmaniasis is associated with intestinal parasitism and secondary infection by commensal bacteria, and is delayed by antibiotic prophylaxis.

Authors:  Michael D Lewis; Andrea Paun; Audrey Romano; Harry Langston; Charlotte A Langner; Ian N Moore; Kevin W Bock; Amanda Fortes Francisco; Jason M Brenchley; David L Sacks
Journal:  PLoS Pathog       Date:  2020-04-13       Impact factor: 6.823

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