Literature DB >> 28628107

Identification of sequence variants influencing immunoglobulin levels.

Stefan Jonsson1, Gardar Sveinbjornsson1, Aitzkoa Lopez de Lapuente Portilla2, Bhairavi Swaminathan2, Rosina Plomp3, Gillian Dekkers4, Ram Ajore2, Mina Ali2, Arthur E H Bentlage4, Evelina Elmér2,5, Gudmundur I Eyjolfsson6, Sigurjon A Gudjonsson1, Urban Gullberg2, Arnaldur Gylfason1, Bjarni V Halldorsson1,7, Markus Hansson2, Hilma Holm1, Åsa Johansson2, Ellinor Johnsson2, Aslaug Jonasdottir1, Bjorn R Ludviksson8, Asmundur Oddsson1, Isleifur Olafsson9, Sigurgeir Olafsson1, Olof Sigurdardottir10,11, Asgeir Sigurdsson1, Lilja Stefansdottir1, Gisli Masson1, Patrick Sulem1, Manfred Wuhrer3, Anna-Karin Wihlborg2, Gudmar Thorleifsson1, Daniel F Gudbjartsson1,12, Unnur Thorsteinsdottir1,11, Gestur Vidarsson4, Ingileif Jonsdottir1,8,11, Björn Nilsson2,13, Kari Stefansson1,11.   

Abstract

Immunoglobulins are the effector molecules of the adaptive humoral immune system. In a genome-wide association study of 19,219 individuals, we found 38 new variants and replicated 5 known variants associating with IgA, IgG or IgM levels or with composite immunoglobulin traits, accounted for by 32 loci. Variants at these loci also affect the risk of autoimmune diseases and blood malignancies and influence blood cell development. Notable associations include a rare variant at RUNX3 decreasing IgA levels by shifting isoform proportions (rs188468174[C>T]: P = 8.3 × 10-55, β = -0.90 s.d.), a rare in-frame deletion in FCGR2B abolishing IgG binding to the encoded receptor (p.Asn106del: P = 4.2 × 10-8, β = 1.03 s.d.), four IGH locus variants influencing class switching, and ten new associations with the HLA region. Our results provide new insight into the regulation of humoral immunity.

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Year:  2017        PMID: 28628107     DOI: 10.1038/ng.3897

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  102 in total

1.  Cutting edge: the PTPN22 allelic variant associated with autoimmunity impairs B cell signaling.

Authors:  Adrian F Arechiga; Tania Habib; Yantao He; Xian Zhang; Zhong-Yin Zhang; Andrew Funk; Jane H Buckner
Journal:  J Immunol       Date:  2009-03-15       Impact factor: 5.422

2.  Overexpression of the autoimmunity-associated phosphatase PTPN22 promotes survival of antigen-stimulated CLL cells by selectively activating AKT.

Authors:  Roberto Negro; Stefania Gobessi; Pablo G Longo; Yantao He; Zhong-Yin Zhang; Luca Laurenti; Dimitar G Efremov
Journal:  Blood       Date:  2012-05-08       Impact factor: 22.113

3.  Engagement of CD153 (CD30 ligand) by CD30+ T cells inhibits class switch DNA recombination and antibody production in human IgD+ IgM+ B cells.

Authors:  A Cerutti; A Schaffer; R G Goodwin; S Shah; H Zan; S Ely; P Casali
Journal:  J Immunol       Date:  2000-07-15       Impact factor: 5.422

4.  The ability of CD40L, but not lipopolysaccharide, to initiate immunoglobulin switching to immunoglobulin G1 is explained by differential induction of NF-kappaB/Rel proteins.

Authors:  S C Lin; H H Wortis; J Stavnezer
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

Review 5.  Roles for TNF-receptor associated factor 3 (TRAF3) in lymphocyte functions.

Authors:  Zuoan Yi; Wai Wai Lin; Laura L Stunz; Gail A Bishop
Journal:  Cytokine Growth Factor Rev       Date:  2013-12-25       Impact factor: 7.638

6.  Genetics of gene expression and its effect on disease.

Authors:  Valur Emilsson; Gudmar Thorleifsson; Bin Zhang; Amy S Leonardson; Florian Zink; Jun Zhu; Sonia Carlson; Agnar Helgason; G Bragi Walters; Steinunn Gunnarsdottir; Magali Mouy; Valgerdur Steinthorsdottir; Gudrun H Eiriksdottir; Gyda Bjornsdottir; Inga Reynisdottir; Daniel Gudbjartsson; Anna Helgadottir; Aslaug Jonasdottir; Adalbjorg Jonasdottir; Unnur Styrkarsdottir; Solveig Gretarsdottir; Kristinn P Magnusson; Hreinn Stefansson; Ragnheidur Fossdal; Kristleifur Kristjansson; Hjortur G Gislason; Tryggvi Stefansson; Bjorn G Leifsson; Unnur Thorsteinsdottir; John R Lamb; Jeffrey R Gulcher; Marc L Reitman; Augustine Kong; Eric E Schadt; Kari Stefansson
Journal:  Nature       Date:  2008-03-16       Impact factor: 49.962

Review 7.  Opinion: uracil DNA glycosylase (UNG) plays distinct and non-canonical roles in somatic hypermutation and class switch recombination.

Authors:  Ashraf S Yousif; Andre Stanlie; Nasim A Begum; Tasuku Honjo
Journal:  Int Immunol       Date:  2014-07-03       Impact factor: 4.823

Review 8.  The Runx genes: lineage-specific oncogenes and tumor suppressors.

Authors:  Ewan R Cameron; James C Neil
Journal:  Oncogene       Date:  2004-05-24       Impact factor: 9.867

9.  A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study.

Authors:  Mark Granada; Jemma B Wilk; Marina Tuzova; David P Strachan; Stephan Weidinger; Eva Albrecht; Christian Gieger; Joachim Heinrich; Blanca E Himes; Gary M Hunninghake; Juan C Celedón; Scott T Weiss; William W Cruikshank; Lindsay A Farrer; David M Center; George T O'Connor
Journal:  J Allergy Clin Immunol       Date:  2011-11-09       Impact factor: 10.793

10.  Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Authors:  Luke Jostins; Stephan Ripke; Rinse K Weersma; Richard H Duerr; Dermot P McGovern; Ken Y Hui; James C Lee; L Philip Schumm; Yashoda Sharma; Carl A Anderson; Jonah Essers; Mitja Mitrovic; Kaida Ning; Isabelle Cleynen; Emilie Theatre; Sarah L Spain; Soumya Raychaudhuri; Philippe Goyette; Zhi Wei; Clara Abraham; Jean-Paul Achkar; Tariq Ahmad; Leila Amininejad; Ashwin N Ananthakrishnan; Vibeke Andersen; Jane M Andrews; Leonard Baidoo; Tobias Balschun; Peter A Bampton; Alain Bitton; Gabrielle Boucher; Stephan Brand; Carsten Büning; Ariella Cohain; Sven Cichon; Mauro D'Amato; Dirk De Jong; Kathy L Devaney; Marla Dubinsky; Cathryn Edwards; David Ellinghaus; Lynnette R Ferguson; Denis Franchimont; Karin Fransen; Richard Gearry; Michel Georges; Christian Gieger; Jürgen Glas; Talin Haritunians; Ailsa Hart; Chris Hawkey; Matija Hedl; Xinli Hu; Tom H Karlsen; Limas Kupcinskas; Subra Kugathasan; Anna Latiano; Debby Laukens; Ian C Lawrance; Charlie W Lees; Edouard Louis; Gillian Mahy; John Mansfield; Angharad R Morgan; Craig Mowat; William Newman; Orazio Palmieri; Cyriel Y Ponsioen; Uros Potocnik; Natalie J Prescott; Miguel Regueiro; Jerome I Rotter; Richard K Russell; Jeremy D Sanderson; Miquel Sans; Jack Satsangi; Stefan Schreiber; Lisa A Simms; Jurgita Sventoraityte; Stephan R Targan; Kent D Taylor; Mark Tremelling; Hein W Verspaget; Martine De Vos; Cisca Wijmenga; David C Wilson; Juliane Winkelmann; Ramnik J Xavier; Sebastian Zeissig; Bin Zhang; Clarence K Zhang; Hongyu Zhao; Mark S Silverberg; Vito Annese; Hakon Hakonarson; Steven R Brant; Graham Radford-Smith; Christopher G Mathew; John D Rioux; Eric E Schadt; Mark J Daly; Andre Franke; Miles Parkes; Severine Vermeire; Jeffrey C Barrett; Judy H Cho
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

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  29 in total

Review 1.  Functional diversification of IgGs through Fc glycosylation.

Authors:  Taia T Wang; Jeffrey V Ravetch
Journal:  J Clin Invest       Date:  2019-09-03       Impact factor: 14.808

Review 2.  Human immune diversity: from evolution to modernity.

Authors:  Adrian Liston; Stephanie Humblet-Baron; Darragh Duffy; An Goris
Journal:  Nat Immunol       Date:  2021-11-18       Impact factor: 25.606

Review 3.  Laboratory Monitoring of Mother, Fetus, and Newborn in Hemolytic Disease of Fetus and Newborn.

Authors:  Morten Hanefeld Dziegiel; Grethe Risum Krog; Anne Todsen Hansen; Marianne Olsen; Birgitte Lausen; Lone Nikoline Nørgaard; Thomas Bergholt; Klaus Rieneck; Frederik Banch Clausen
Journal:  Transfus Med Hemother       Date:  2021-09-08       Impact factor: 3.747

4.  Analysis of antibody binding specificities in twin and SNP-genotyped cohorts reveals that antiviral antibody epitope selection is a heritable trait.

Authors:  Thiagarajan Venkataraman; Cristian Valencia; Massimo Mangino; William Morgenlander; Steven J Clipman; Thomas Liechti; Ana Valencia; Paraskevi Christofidou; Tim Spector; Mario Roederer; Priya Duggal; H Benjamin Larman
Journal:  Immunity       Date:  2022-01-11       Impact factor: 43.474

5.  A genome-wide association study of IgM antibody against phosphorylcholine: shared genetics and phenotypic relationship to chronic lymphocytic leukemia.

Authors:  Xu Chen; Stefan Gustafsson; Thomas Whitington; Yan Borné; Erik Lorentzen; Jitong Sun; Peter Almgren; Jun Su; Robert Karlsson; Jie Song; Yi Lu; Yiqiang Zhan; Sara Hägg; Per Svensson; Karin E Smedby; Susan L Slager; Erik Ingelsson; Cecilia M Lindgren; Andrew P Morris; Olle Melander; Thomas Karlsson; Ulf de Faire; Kenneth Caidahl; Gunnar Engström; Lars Lind; Mikael C I Karlsson; Nancy L Pedersen; Johan Frostegård; Patrik K E Magnusson
Journal:  Hum Mol Genet       Date:  2018-05-15       Impact factor: 6.150

6.  Fermented camel milk by Lactococcus lactis subsp. cremoris attenuates erythrocytes oxidative stress-induced hematological and immunological damage in CCl4-intoxicated mice.

Authors:  Houda Hamed; Fatma Chaari; Zied Ghannoudi; Kaouther Dhouib; Semia Chaabouni; Abdelfattah El Feki; Ahmed Gargouri
Journal:  Environ Sci Pollut Res Int       Date:  2018-07-02       Impact factor: 4.223

7.  FcγR Binding and ADCC Activity of Human IgG Allotypes.

Authors:  Steven W de Taeye; Arthur E H Bentlage; Mirjam M Mebius; Joyce I Meesters; Suzanne Lissenberg-Thunnissen; David Falck; Thomas Sénard; Nima Salehi; Manfred Wuhrer; Janine Schuurman; Aran F Labrijn; Theo Rispens; Gestur Vidarsson
Journal:  Front Immunol       Date:  2020-05-06       Impact factor: 7.561

8.  Immune Cell Associations with Cancer Risk.

Authors:  Luis Palomero; Ivan Galván-Femenía; Rafael de Cid; Roderic Espín; Daniel R Barnes; Eline Blommaert; Miguel Gil-Gil; Catalina Falo; Agostina Stradella; Dan Ouchi; Albert Roso-Llorach; Concepció Violan; María Peña-Chilet; Joaquín Dopazo; Ana Isabel Extremera; Mar García-Valero; Carmen Herranz; Francesca Mateo; Elisabetta Mereu; Jonathan Beesley; Georgia Chenevix-Trench; Cecilia Roux; Tak Mak; Joan Brunet; Razq Hakem; Chiara Gorrini; Antonis C Antoniou; Conxi Lázaro; Miquel Angel Pujana
Journal:  iScience       Date:  2020-06-20

9.  Non-coding Class Switch Recombination-Related Transcription in Human Normal and Pathological Immune Responses.

Authors:  Helena Kuri-Magaña; Leonardo Collado-Torres; Andrew E Jaffe; Humberto Valdovinos-Torres; Marbella Ovilla-Muñoz; Juan Téllez-Sosa; Laura C Bonifaz; Jesús Martínez-Barnetche
Journal:  Front Immunol       Date:  2018-11-21       Impact factor: 7.561

Review 10.  Beyond Allotypes: The Influence of Allelic Diversity in Antibody Constant Domains.

Authors:  Annmaree K Warrender; William Kelton
Journal:  Front Immunol       Date:  2020-08-18       Impact factor: 7.561

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