Literature DB >> 28624666

The nuclear pore complex core scaffold and permeability barrier: variations of a common theme.

Ryo Hayama1, Michael P Rout1, Javier Fernandez-Martinez2.   

Abstract

The study of the nuclear pore complex (NPC) is a fascinating endeavor, as it not only implies uncovering the 'engineering marvel' of its architecture and function, but also provides a key window into a significant evolutionary event: the origin of the eukaryotic cell. The combined efforts of many groups in the field, with the help of novel methodologies and new model organisms, are facilitating a much deeper understanding of this complex assembly. Here we cover recent advances on the characterization of the structure of the NPC scaffold and of the biophysical mechanisms that define the permeability barrier. We identify common architectural and functional principles between those two NPC compartments, expanding the previous protocoatomer hypothesis to suggest possible evolutionary origins for the FG nucleoporins and the NPC permeability barrier.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28624666      PMCID: PMC5568245          DOI: 10.1016/j.ceb.2017.05.003

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  76 in total

Review 1.  Virtual gating and nuclear transport: the hole picture.

Authors:  Michael P Rout; John D Aitchison; Marcelo O Magnasco; Brian T Chait
Journal:  Trends Cell Biol       Date:  2003-12       Impact factor: 20.808

2.  Imaging of single-molecule translocation through nuclear pore complexes.

Authors:  Weidong Yang; Jeff Gelles; Siegfried M Musser
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-11       Impact factor: 11.205

3.  Structural characterization by cross-linking reveals the detailed architecture of a coatomer-related heptameric module from the nuclear pore complex.

Authors:  Yi Shi; Javier Fernandez-Martinez; Elina Tjioe; Riccardo Pellarin; Seung Joong Kim; Rosemary Williams; Dina Schneidman-Duhovny; Andrej Sali; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2014-08-26       Impact factor: 5.911

4.  Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex.

Authors:  Barak Raveh; Jerome M Karp; Samuel Sparks; Kaushik Dutta; Michael P Rout; Andrej Sali; David Cowburn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

Review 5.  Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail?

Authors:  Martin Beck; Wolfgang Baumeister
Journal:  Trends Cell Biol       Date:  2016-09-23       Impact factor: 20.808

6.  Structural evidence for common ancestry of the nuclear pore complex and vesicle coats.

Authors:  Stephen G Brohawn; Nina C Leksa; Eric D Spear; Kanagalaghatta R Rajashankar; Thomas U Schwartz
Journal:  Science       Date:  2008-10-30       Impact factor: 47.728

7.  Simple kinetic relationships and nonspecific competition govern nuclear import rates in vivo.

Authors:  Benjamin L Timney; Jaclyn Tetenbaum-Novatt; Diana S Agate; Rosemary Williams; Wenzhu Zhang; Brian T Chait; Michael P Rout
Journal:  J Cell Biol       Date:  2006-11-20       Impact factor: 10.539

8.  Nuclear pore basket proteins are tethered to the nuclear envelope and can regulate membrane curvature.

Authors:  Noémi Mészáros; Jakub Cibulka; Maria Jose Mendiburo; Anete Romanauska; Maren Schneider; Alwin Köhler
Journal:  Dev Cell       Date:  2015-05-04       Impact factor: 12.270

9.  Evidence for a shared nuclear pore complex architecture that is conserved from the last common eukaryotic ancestor.

Authors:  Jeffrey A DeGrasse; Kelly N DuBois; Damien Devos; T Nicolai Siegel; Andrej Sali; Mark C Field; Michael P Rout; Brian T Chait
Journal:  Mol Cell Proteomics       Date:  2009-06-13       Impact factor: 5.911

10.  In situ structural analysis of the human nuclear pore complex.

Authors:  Alexander von Appen; Jan Kosinski; Lenore Sparks; Alessandro Ori; Amanda L DiGuilio; Benjamin Vollmer; Marie-Therese Mackmull; Niccolo Banterle; Luca Parca; Panagiotis Kastritis; Katarzyna Buczak; Shyamal Mosalaganti; Wim Hagen; Amparo Andres-Pons; Edward A Lemke; Peer Bork; Wolfram Antonin; Joseph S Glavy; Khanh Huy Bui; Martin Beck
Journal:  Nature       Date:  2015-09-23       Impact factor: 49.962

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  17 in total

Review 1.  IDPs in macromolecular complexes: the roles of multivalent interactions in diverse assemblies.

Authors:  Ho Yee Joyce Fung; Melissa Birol; Elizabeth Rhoades
Journal:  Curr Opin Struct Biol       Date:  2018-01-04       Impact factor: 6.809

2.  Deciphering the "Fuzzy" Interaction of FG Nucleoporins and Transport Factors Using Small-Angle Neutron Scattering.

Authors:  Samuel Sparks; Deniz B Temel; Michael P Rout; David Cowburn
Journal:  Structure       Date:  2018-02-08       Impact factor: 5.006

Review 3.  Thyroid hormone receptor localization in target tissues.

Authors:  Cyril S Anyetei-Anum; Vincent R Roggero; Lizabeth A Allison
Journal:  J Endocrinol       Date:  2018-02-12       Impact factor: 4.286

4.  Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment.

Authors:  Bart W Hoogenboom; Loren E Hough; Edward A Lemke; Roderick Y H Lim; Patrick R Onck; Anton Zilman
Journal:  Phys Rep       Date:  2021-03-24       Impact factor: 30.510

Review 5.  Traffic jam at the nuclear pore: All roads lead to nucleocytoplasmic transport defects in ALS/FTD.

Authors:  Claudia Fallini; Bilal Khalil; Courtney L Smith; Wilfried Rossoll
Journal:  Neurobiol Dis       Date:  2020-03-14       Impact factor: 5.996

Review 6.  Karyopherin-βs play a key role as a phase separation regulator.

Authors:  Takuya Yoshizawa; Lin Guo
Journal:  J Biochem       Date:  2021-09-22       Impact factor: 3.241

Review 7.  One Ring to Rule them All? Structural and Functional Diversity in the Nuclear Pore Complex.

Authors:  Javier Fernandez-Martinez; Michael P Rout
Journal:  Trends Biochem Sci       Date:  2021-02-06       Impact factor: 14.264

Review 8.  Nucleo-cytoplasmic transport defects and protein aggregates in neurodegeneration.

Authors:  Giacomo Bitetto; Alessio Di Fonzo
Journal:  Transl Neurodegener       Date:  2020-07-03       Impact factor: 8.014

Review 9.  Assembly of the small ribosomal subunit in yeast: mechanism and regulation.

Authors:  Malik Chaker-Margot
Journal:  RNA       Date:  2018-04-30       Impact factor: 4.942

10.  Fuzzy Interactions Form and Shape the Histone Transport Complex.

Authors:  Nives Ivic; Mia Potocnjak; Victor Solis-Mezarino; Franz Herzog; Silvija Bilokapic; Mario Halic
Journal:  Mol Cell       Date:  2019-02-26       Impact factor: 17.970

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