Literature DB >> 28619718

Click chemistry enables preclinical evaluation of targeted epigenetic therapies.

Dean S Tyler1,2, Johanna Vappiani3, Tatiana Cañeque4,5,6, Enid Y N Lam1,2, Aoife Ward3, Omer Gilan1,2, Yih-Chih Chan1, Antje Hienzsch4,5,6, Anna Rutkowska3, Thilo Werner3, Anne J Wagner3, Dave Lugo7, Richard Gregory7, Cesar Ramirez Molina7, Neil Garton7, Christopher R Wellaway7, Susan Jackson1, Laura MacPherson1,2, Margarida Figueiredo1, Sabine Stolzenburg1, Charles C Bell1,2, Colin House1, Sarah-Jane Dawson1,2,8, Edwin D Hawkins9, Gerard Drewes3, Rab K Prinjha7, Raphaël Rodriguez4,5,6, Paola Grandi10, Mark A Dawson11,2,8,12.   

Abstract

The success of new therapies hinges on our ability to understand their molecular and cellular mechanisms of action. We modified BET bromodomain inhibitors, an epigenetic-based therapy, to create functionally conserved compounds that are amenable to click chemistry and can be used as molecular probes in vitro and in vivo. We used click proteomics and click sequencing to explore the gene regulatory function of BRD4 (bromodomain containing protein 4) and the transcriptional changes induced by BET inhibitors. In our studies of mouse models of acute leukemia, we used high-resolution microscopy and flow cytometry to highlight the heterogeneity of drug activity within tumor cells located in different tissue compartments. We also demonstrate the differential distribution and effects of BET inhibitors in normal and malignant cells in vivo. This study provides a potential framework for the preclinical assessment of a wide range of drugs.
Copyright © 2017 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2017        PMID: 28619718      PMCID: PMC5865750          DOI: 10.1126/science.aal2066

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  21 in total

1.  Identifying the proteins to which small-molecule probes and drugs bind in cells.

Authors:  Shao-En Ong; Monica Schenone; Adam A Margolin; Xiaoyu Li; Kathy Do; Mary K Doud; D R Mani; Letian Kuai; Xiang Wang; John L Wood; Nicola J Tolliday; Angela N Koehler; Lisa A Marcaurelle; Todd R Golub; Robert J Gould; Stuart L Schreiber; Steven A Carr
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-02       Impact factor: 11.205

2.  RVX-208, an inhibitor of BET transcriptional regulators with selectivity for the second bromodomain.

Authors:  Sarah Picaud; Christopher Wells; Ildiko Felletar; Deborah Brotherton; Sarah Martin; Pavel Savitsky; Beatriz Diez-Dacal; Martin Philpott; Chas Bountra; Hannah Lingard; Oleg Fedorov; Susanne Müller; Paul E Brennan; Stefan Knapp; Panagis Filippakopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-18       Impact factor: 11.205

Review 3.  The mechanisms behind the therapeutic activity of BET bromodomain inhibition.

Authors:  Junwei Shi; Christopher R Vakoc
Journal:  Mol Cell       Date:  2014-06-05       Impact factor: 17.970

4.  Phospho switch triggers Brd4 chromatin binding and activator recruitment for gene-specific targeting.

Authors:  Shwu-Yuan Wu; A-Young Lee; Hsien-Tsung Lai; Hong Zhang; Cheng-Ming Chiang
Journal:  Mol Cell       Date:  2013-01-11       Impact factor: 17.970

5.  The commonly used PI3-kinase probe LY294002 is an inhibitor of BET bromodomains.

Authors:  Antje Dittmann; Thilo Werner; Chun-Wa Chung; Mikhail M Savitski; Maria Fälth Savitski; Paola Grandi; Carsten Hopf; Matthew Lindon; Gitte Neubauer; Rabinder K Prinjha; Marcus Bantscheff; Gerard Drewes
Journal:  ACS Chem Biol       Date:  2013-12-10       Impact factor: 5.100

6.  Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia.

Authors:  Mark A Dawson; Rab K Prinjha; Antje Dittmann; George Giotopoulos; Marcus Bantscheff; Wai-In Chan; Samuel C Robson; Chun-wa Chung; Carsten Hopf; Mikhail M Savitski; Carola Huthmacher; Emma Gudgin; Dave Lugo; Soren Beinke; Trevor D Chapman; Emma J Roberts; Peter E Soden; Kurt R Auger; Olivier Mirguet; Konstanze Doehner; Ruud Delwel; Alan K Burnett; Phillip Jeffrey; Gerard Drewes; Kevin Lee; Brian J P Huntly; Tony Kouzarides
Journal:  Nature       Date:  2011-10-02       Impact factor: 49.962

7.  Chemical biology. A bump-and-hole approach to engineer controlled selectivity of BET bromodomain chemical probes.

Authors:  Matthias G J Baud; Enrique Lin-Shiao; Teresa Cardote; Cynthia Tallant; Annica Pschibul; Kwok-Ho Chan; Michael Zengerle; Jordi R Garcia; Terence T-L Kwan; Fleur M Ferguson; Alessio Ciulli
Journal:  Science       Date:  2014-10-16       Impact factor: 47.728

8.  Proteogenomic characterization and mapping of nucleosomes decoded by Brd and HP1 proteins.

Authors:  Gary LeRoy; Iouri Chepelev; Peter A DiMaggio; Mario A Blanco; Barry M Zee; Keji Zhao; Benjamin A Garcia
Journal:  Genome Biol       Date:  2012-08-16       Impact factor: 13.583

Review 9.  The cancer epigenome: Concepts, challenges, and therapeutic opportunities.

Authors:  Mark A Dawson
Journal:  Science       Date:  2017-03-16       Impact factor: 63.714

10.  Synthesis of marmycin A and investigation into its cellular activity.

Authors:  Tatiana Cañeque; Filipe Gomes; Trang Thi Mai; Giovanni Maestri; Max Malacria; Raphaël Rodriguez
Journal:  Nat Chem       Date:  2015-07-20       Impact factor: 24.427

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  38 in total

Review 1.  "Clicking" Gene Therapeutics: A Successful Union of Chemistry and Biomedicine for New Solutions.

Authors:  Kira Astakhova; Roslyn Ray; Maria Taskova; Jesper Uhd; Annika Carstens; Kevin Morris
Journal:  Mol Pharm       Date:  2018-02-26       Impact factor: 4.939

2.  Small molecule JQ1 promotes prostate cancer invasion via BET-independent inactivation of FOXA1.

Authors:  Leiming Wang; Mafei Xu; Chung-Yang Kao; Sophia Y Tsai; Ming-Jer Tsai
Journal:  J Clin Invest       Date:  2020-04-01       Impact factor: 14.808

3.  Proteomics for cancer drug design.

Authors:  Amanda Haymond; Justin B Davis; Virginia Espina
Journal:  Expert Rev Proteomics       Date:  2019-08-04       Impact factor: 3.940

Review 4.  Expanding the medicinal chemistry synthetic toolbox.

Authors:  Jonas Boström; Dean G Brown; Robert J Young; György M Keserü
Journal:  Nat Rev Drug Discov       Date:  2018-08-24       Impact factor: 84.694

Review 5.  Chromatin dependencies in cancer and inflammation.

Authors:  Ivan Marazzi; Benjamin D Greenbaum; Diana H P Low; Ernesto Guccione
Journal:  Nat Rev Mol Cell Biol       Date:  2017-11-29       Impact factor: 94.444

6.  Design of BET Inhibitor Bottlebrush Prodrugs with Superior Efficacy and Devoid of Systemic Toxicities.

Authors:  Farrukh Vohidov; Jannik N Andersen; Kyriakos D Economides; Michail V Shipitsin; Olga Burenkova; James C Ackley; Bhavatarini Vangamudi; Hung V-T Nguyen; Nolan M Gallagher; Peyton Shieh; Matthew R Golder; Jenny Liu; William K Dahlberg; Deborah J C Ehrlich; Julie Kim; Samantha L Kristufek; Sung Jin Huh; Allison M Neenan; Joelle Baddour; Sattanathan Paramasivan; Elisa de Stanchina; Gaurab Kc; David J Turnquist; Jennifer K Saucier-Sawyer; Paul W Kopesky; Samantha W Brady; Michael J Jessel; Lawrence A Reiter; Donald E Chickering; Jeremiah A Johnson; Peter Blume-Jensen
Journal:  J Am Chem Soc       Date:  2021-03-19       Impact factor: 15.419

7.  Superresolution imaging of individual replication forks reveals unexpected prodrug resistance mechanism.

Authors:  Therese Triemer; Alessandra Messikommer; Stella M K Glasauer; Jawad Alzeer; Miriam H Paulisch; Nathan W Luedtke
Journal:  Proc Natl Acad Sci U S A       Date:  2018-01-29       Impact factor: 11.205

8.  Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation.

Authors:  Omer Gilan; Inmaculada Rioja; Rab K Prinjha; Mark A Dawson; Kathy Knezevic; Matthew J Bell; Miriam M Yeung; Nicola R Harker; Enid Y N Lam; Chun-Wa Chung; Paul Bamborough; Massimo Petretich; Marjeta Urh; Stephen J Atkinson; Anna K Bassil; Emma J Roberts; Dane Vassiliadis; Marian L Burr; Alex G S Preston; Christopher Wellaway; Thilo Werner; James R Gray; Anne-Marie Michon; Thomas Gobbetti; Vinod Kumar; Peter E Soden; Andrea Haynes; Johanna Vappiani; David F Tough; Simon Taylor; Sarah-Jane Dawson; Marcus Bantscheff; Matthew Lindon; Gerard Drewes; Emmanuel H Demont; Danette L Daniels; Paola Grandi
Journal:  Science       Date:  2020-03-19       Impact factor: 47.728

Review 9.  Targeting the epigenetic regulation of antitumour immunity.

Authors:  Simon J Hogg; Paul A Beavis; Mark A Dawson; Ricky W Johnstone
Journal:  Nat Rev Drug Discov       Date:  2020-09-14       Impact factor: 84.694

10.  Fast functionalization of ultrasound microbubbles using strain promoted click chemistry.

Authors:  Xifeng Liu; Ping Gong; Pengfei Song; Feng Xie; A Lee Miller Ii; Shigao Chen; Lichun Lu
Journal:  Biomater Sci       Date:  2018-02-27       Impact factor: 6.843

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