Literature DB >> 25323695

Chemical biology. A bump-and-hole approach to engineer controlled selectivity of BET bromodomain chemical probes.

Matthias G J Baud1,2, Enrique Lin-Shiao1,2, Teresa Cardote1, Cynthia Tallant2, Annica Pschibul1, Kwok-Ho Chan1, Michael Zengerle1, Jordi R Garcia1, Terence T-L Kwan2, Fleur M Ferguson2, Alessio Ciulli1,2.   

Abstract

Small molecules are useful tools for probing the biological function and therapeutic potential of individual proteins, but achieving selectivity is challenging when the target protein shares structural domains with other proteins. The Bromo and Extra-Terminal (BET) proteins have attracted interest because of their roles in transcriptional regulation, epigenetics, and cancer. The BET bromodomains (protein interaction modules that bind acetyl-lysine) have been targeted by potent small-molecule inhibitors, but these inhibitors lack selectivity for individual family members. We developed an ethyl derivative of an existing small-molecule inhibitor, I-BET/JQ1, and showed that it binds leucine/alanine mutant bromodomains with nanomolar affinity and achieves up to 540-fold selectivity relative to wild-type bromodomains. Cell culture studies showed that blockade of the first bromodomain alone is sufficient to displace a specific BET protein, Brd4, from chromatin. Expansion of this approach could help identify the individual roles of single BET proteins in human physiology and disease.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 25323695      PMCID: PMC4458378          DOI: 10.1126/science.1249830

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  16 in total

Review 1.  Place your BETs: the therapeutic potential of bromodomains.

Authors:  R K Prinjha; J Witherington; K Lee
Journal:  Trends Pharmacol Sci       Date:  2012-01-23       Impact factor: 14.819

2.  Targeting MYC dependence in cancer by inhibiting BET bromodomains.

Authors:  Jennifer A Mertz; Andrew R Conery; Barbara M Bryant; Peter Sandy; Srividya Balasubramanian; Deanna A Mele; Louise Bergeron; Robert J Sims
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

Review 3.  BET domain co-regulators in obesity, inflammation and cancer.

Authors:  Anna C Belkina; Gerald V Denis
Journal:  Nat Rev Cancer       Date:  2012-06-22       Impact factor: 60.716

4.  BET bromodomain inhibition as a therapeutic strategy to target c-Myc.

Authors:  Jake E Delmore; Ghayas C Issa; Madeleine E Lemieux; Peter B Rahl; Junwei Shi; Hannah M Jacobs; Efstathios Kastritis; Timothy Gilpatrick; Ronald M Paranal; Jun Qi; Marta Chesi; Anna C Schinzel; Michael R McKeown; Timothy P Heffernan; Christopher R Vakoc; P Leif Bergsagel; Irene M Ghobrial; Paul G Richardson; Richard A Young; William C Hahn; Kenneth C Anderson; Andrew L Kung; James E Bradner; Constantine S Mitsiades
Journal:  Cell       Date:  2011-09-01       Impact factor: 41.582

5.  Discovery and characterization of small molecule inhibitors of the BET family bromodomains.

Authors:  Chun-Wa Chung; Herve Coste; Julia H White; Olivier Mirguet; Jonathan Wilde; Romain L Gosmini; Chris Delves; Sylvie M Magny; Robert Woodward; Stephen A Hughes; Eric V Boursier; Helen Flynn; Anne M Bouillot; Paul Bamborough; Jean-Marie G Brusq; Francoise J Gellibert; Emma J Jones; Alizon M Riou; Paul Homes; Sandrine L Martin; Iain J Uings; Jerome Toum; Catherine A Clement; Anne-Benedicte Boullay; Rachel L Grimley; Florence M Blandel; Rab K Prinjha; Kevin Lee; Jorge Kirilovsky; Edwige Nicodeme
Journal:  J Med Chem       Date:  2011-05-13       Impact factor: 7.446

6.  Engineering unnatural nucleotide specificity for Rous sarcoma virus tyrosine kinase to uniquely label its direct substrates.

Authors:  K Shah; Y Liu; C Deirmengian; K M Shokat
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

Review 7.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering.

Authors:  Thomas Gaj; Charles A Gersbach; Carlos F Barbas
Journal:  Trends Biotechnol       Date:  2013-05-09       Impact factor: 19.536

8.  Inhibition of BET recruitment to chromatin as an effective treatment for MLL-fusion leukaemia.

Authors:  Mark A Dawson; Rab K Prinjha; Antje Dittmann; George Giotopoulos; Marcus Bantscheff; Wai-In Chan; Samuel C Robson; Chun-wa Chung; Carsten Hopf; Mikhail M Savitski; Carola Huthmacher; Emma Gudgin; Dave Lugo; Soren Beinke; Trevor D Chapman; Emma J Roberts; Peter E Soden; Kurt R Auger; Olivier Mirguet; Konstanze Doehner; Ruud Delwel; Alan K Burnett; Phillip Jeffrey; Gerard Drewes; Kevin Lee; Brian J P Huntly; Tony Kouzarides
Journal:  Nature       Date:  2011-10-02       Impact factor: 49.962

9.  RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia.

Authors:  Johannes Zuber; Junwei Shi; Eric Wang; Amy R Rappaport; Harald Herrmann; Edward A Sison; Daniel Magoon; Jun Qi; Katharina Blatt; Mark Wunderlich; Meredith J Taylor; Christopher Johns; Agustin Chicas; James C Mulloy; Scott C Kogan; Patrick Brown; Peter Valent; James E Bradner; Scott W Lowe; Christopher R Vakoc
Journal:  Nature       Date:  2011-08-03       Impact factor: 49.962

10.  Selective inhibition of BET bromodomains.

Authors:  Panagis Filippakopoulos; Jun Qi; Sarah Picaud; Yao Shen; William B Smith; Oleg Fedorov; Elizabeth M Morse; Tracey Keates; Tyler T Hickman; Ildiko Felletar; Martin Philpott; Shonagh Munro; Michael R McKeown; Yuchuan Wang; Amanda L Christie; Nathan West; Michael J Cameron; Brian Schwartz; Tom D Heightman; Nicholas La Thangue; Christopher A French; Olaf Wiest; Andrew L Kung; Stefan Knapp; James E Bradner
Journal:  Nature       Date:  2010-09-24       Impact factor: 49.962

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  61 in total

1.  A bumpy, holey method to probe proteins.

Authors:  Allison Doerr
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

Review 2.  Bromodomains in Protozoan Parasites: Evolution, Function, and Opportunities for Drug Development.

Authors:  Victoria Jeffers; Chunlin Yang; Sherri Huang; William J Sullivan
Journal:  Microbiol Mol Biol Rev       Date:  2017-01-11       Impact factor: 11.056

3.  Production of homogeneous glycoprotein with multisite modifications by an engineered N-glycosyltransferase mutant.

Authors:  Qitao Song; Zhigang Wu; Yueyuan Fan; Woran Song; Peiru Zhang; Li Wang; Faxing Wang; Yangyang Xu; Peng G Wang; Jiansong Cheng
Journal:  J Biol Chem       Date:  2017-04-05       Impact factor: 5.157

Review 4.  BET bromodomain proteins and epigenetic regulation of inflammation: implications for type 2 diabetes and breast cancer.

Authors:  Dequina A Nicholas; Guillaume Andrieu; Katherine J Strissel; Barbara S Nikolajczyk; Gerald V Denis
Journal:  Cell Mol Life Sci       Date:  2016-08-04       Impact factor: 9.261

5.  BRD4 Regulates Metastatic Potential of Castration-Resistant Prostate Cancer through AHNAK.

Authors:  Jordan S Shafran; Guillaume P Andrieu; Balázs Györffy; Gerald V Denis
Journal:  Mol Cancer Res       Date:  2019-05-20       Impact factor: 5.852

6.  Rational design of allosteric-inhibition sites in classical protein tyrosine phosphatases.

Authors:  Cynthia M Chio; Xiaoling Yu; Anthony C Bishop
Journal:  Bioorg Med Chem       Date:  2015-03-17       Impact factor: 3.641

7.  Target validation: Switching domains.

Authors:  Alessio Ciulli
Journal:  Nat Chem Biol       Date:  2016-08-18       Impact factor: 15.040

8.  Allosteric activation of membrane-bound glutamate receptors using coordination chemistry within living cells.

Authors:  Shigeki Kiyonaka; Ryou Kubota; Yukiko Michibata; Masayoshi Sakakura; Hideo Takahashi; Tomohiro Numata; Ryuji Inoue; Michisuke Yuzaki; Itaru Hamachi
Journal:  Nat Chem       Date:  2016-06-27       Impact factor: 24.427

9.  Discovery of I-BRD9, a Selective Cell Active Chemical Probe for Bromodomain Containing Protein 9 Inhibition.

Authors:  Natalie H Theodoulou; Paul Bamborough; Andrew J Bannister; Isabelle Becher; Rino A Bit; Ka Hing Che; Chun-wa Chung; Antje Dittmann; Gerard Drewes; David H Drewry; Laurie Gordon; Paola Grandi; Melanie Leveridge; Matthew Lindon; Anne-Marie Michon; Judit Molnar; Samuel C Robson; Nicholas C O Tomkinson; Tony Kouzarides; Rab K Prinjha; Philip G Humphreys
Journal:  J Med Chem       Date:  2015-04-30       Impact factor: 7.446

Review 10.  The Bump-and-Hole Tactic: Expanding the Scope of Chemical Genetics.

Authors:  Kabirul Islam
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

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