Literature DB >> 28615365

A Decade of GWAS Results in Lung Cancer.

Yohan Bossé1,2, Christopher I Amos3.   

Abstract

Genome-wide association studies (GWAS) were successful to identify genetic factors robustly associated with lung cancer. This review aims to synthesize the literature in this field and accelerate the translation of GWAS discoveries into results that are closer to clinical applications. A chronologic presentation of published GWAS on lung cancer susceptibility, survival, and response to treatment is presented. The most important results are tabulated to provide a concise overview in one read. GWAS have reported 45 lung cancer susceptibility loci with varying strength of evidence and highlighted suspected causal genes at each locus. Some genetic risk loci have been refined to more homogeneous subgroups of lung cancer patients in terms of histologic subtypes, smoking status, gender, and ethnicity. Overall, these discoveries are an important step for future development of new therapeutic targets and biomarkers to personalize and improve the quality of care for patients. GWAS results are on the edge of offering new tools for targeted screening in high-risk individuals, but more research is needed if GWAS are to pay off the investment. Complementary genomic datasets and functional studies are needed to refine the underlying molecular mechanisms of lung cancer preliminarily revealed by GWAS and reach results that are medically actionable. Cancer Epidemiol Biomarkers Prev; 27(4); 363-79. ©2018 AACRSee all articles in this CEBP Focus section, "Genome-Wide Association Studies in Cancer." ©2017 American Association for Cancer Research.

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Year:  2017        PMID: 28615365      PMCID: PMC6464125          DOI: 10.1158/1055-9965.EPI-16-0794

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  176 in total

1.  Hereditary retinoblastoma and risk of lung cancer.

Authors:  R A Kleinerman; R E Tarone; D H Abramson; J M Seddon; F P Li; M A Tucker
Journal:  J Natl Cancer Inst       Date:  2000-12-20       Impact factor: 13.506

Review 2.  Developmental roles of the glypicans.

Authors:  B De Cat; G David
Journal:  Semin Cell Dev Biol       Date:  2001-04       Impact factor: 7.727

3.  TAJ, a novel member of the tumor necrosis factor receptor family, activates the c-Jun N-terminal kinase pathway and mediates caspase-independent cell death.

Authors:  M T Eby; A Jasmin; A Kumar; K Sharma; P M Chaudhary
Journal:  J Biol Chem       Date:  2000-05-19       Impact factor: 5.157

4.  p51A (TAp63gamma), a p53 homolog, accumulates in response to DNA damage for cell regulation.

Authors:  I Katoh; K I Aisaki; S I Kurata; S Ikawa; Y Ikawa
Journal:  Oncogene       Date:  2000-06-22       Impact factor: 9.867

Review 5.  Glypicans in growth control and cancer.

Authors:  J Filmus
Journal:  Glycobiology       Date:  2001-03       Impact factor: 4.313

6.  ACVR1B (ALK4, activin receptor type 1B) gene mutations in pancreatic carcinoma.

Authors:  G H Su; R Bansal; K M Murphy; E Montgomery; C J Yeo; R H Hruban; S E Kern
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

7.  Transcription of the inositol polyphosphate 1-phosphatase gene (INPP1) is upregulated in human colorectal cancer.

Authors:  S R Li; V G Gyselman; O Lalude; S Dorudi; S A Bustin
Journal:  Mol Carcinog       Date:  2000-04       Impact factor: 4.784

8.  A novel gene, CRR9, which was up-regulated in CDDP-resistant ovarian tumor cell line, was associated with apoptosis.

Authors:  K Yamamoto; A Okamoto; S Isonishi; K Ochiai; Y Ohtake
Journal:  Biochem Biophys Res Commun       Date:  2001-02-02       Impact factor: 3.575

9.  Cancer susceptibility of mice with a homozygous deletion in the COOH-terminal domain of the Brca2 gene.

Authors:  Kimberly A McAllister; L Michelle Bennett; Chris D Houle; Toni Ward; Jason Malphurs; N Keith Collins; Carol Cachafeiro; Joseph Haseman; Eugenia H Goulding; Donna Bunch; E Mitch Eddy; Barbara J Davis; Roger W Wiseman
Journal:  Cancer Res       Date:  2002-02-15       Impact factor: 12.701

10.  Significant up-regulation of a novel gene, CLCP1, in a highly metastatic lung cancer subline as well as in lung cancers in vivo.

Authors:  Katsumi Koshikawa; Hirotaka Osada; Ken-Ichi Kozaki; Hiroyuki Konishi; Akira Masuda; Yoshio Tatematsu; Tetsuya Mitsudomi; Akimasa Nakao; Takashi Takahashi
Journal:  Oncogene       Date:  2002-04-25       Impact factor: 9.867

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  66 in total

Review 1.  Surviving With Smog and Smoke: Precision Interventions?

Authors:  Hua Cai; Chen Wang
Journal:  Chest       Date:  2017-07-08       Impact factor: 9.410

2.  Transcriptome-wide association study reveals candidate causal genes for lung cancer.

Authors:  Yohan Bossé; Zhonglin Li; Jun Xia; Venkata Manem; Robert Carreras-Torres; Aurélie Gabriel; Nathalie Gaudreault; Demetrius Albanes; Melinda C Aldrich; Angeline Andrew; Susanne Arnold; Heike Bickeböller; Stig E Bojesen; Paul Brennan; Hans Brunnstrom; Neil Caporaso; Chu Chen; David C Christiani; John K Field; Gary Goodman; Kjell Grankvist; Richard Houlston; Mattias Johansson; Mikael Johansson; Lambertus A Kiemeney; Stephen Lam; Maria T Landi; Philip Lazarus; Loic Le Marchand; Geoffrey Liu; Olle Melander; Gadi Rennert; Angela Risch; Susan M Rosenberg; Matthew B Schabath; Sanjay Shete; Zhuoyi Song; Victoria L Stevens; Adonina Tardon; H-Erich Wichmann; Penella Woll; Shan Zienolddiny; Ma'en Obeidat; Wim Timens; Rayjean J Hung; Philippe Joubert; Christopher I Amos; James D McKay
Journal:  Int J Cancer       Date:  2019-12-09       Impact factor: 7.396

3.  Comprehensive functional annotation of susceptibility variants identifies genetic heterogeneity between lung adenocarcinoma and squamous cell carcinoma.

Authors:  Na Qin; Yuancheng Li; Cheng Wang; Meng Zhu; Juncheng Dai; Tongtong Hong; Demetrius Albanes; Stephen Lam; Adonina Tardon; Chu Chen; Gary Goodman; Stig E Bojesen; Maria Teresa Landi; Mattias Johansson; Angela Risch; H-Erich Wichmann; Heike Bickeboller; Gadi Rennert; Susanne Arnold; Paul Brennan; John K Field; Sanjay Shete; Loic Le Marchand; Olle Melander; Hans Brunnstrom; Geoffrey Liu; Rayjean J Hung; Angeline Andrew; Lambertus A Kiemeney; Shan Zienolddiny; Kjell Grankvist; Mikael Johansson; Neil Caporaso; Penella Woll; Philip Lazarus; Matthew B Schabath; Melinda C Aldrich; Victoria L Stevens; Guangfu Jin; David C Christiani; Zhibin Hu; Christopher I Amos; Hongxia Ma; Hongbing Shen
Journal:  Front Med       Date:  2020-09-05       Impact factor: 4.592

4.  Association Analysis of Driver Gene-Related Genetic Variants Identified Novel Lung Cancer Susceptibility Loci with 20,871 Lung Cancer Cases and 15,971 Controls.

Authors:  Yuzhuo Wang; Olga Y Gorlova; Ivan P Gorlov; Meng Zhu; Juncheng Dai; Demetrius Albanes; Stephen Lam; Adonina Tardon; Chu Chen; Gary E Goodman; Stig E Bojesen; Maria Teresa Landi; Mattias Johansson; Angela Risch; Heunz-Erich Wichmann; Heike Bickeboller; David C Christiani; Gad Rennert; Susanne M Arnold; Paul Brennan; John K Field; Sanjay Shete; Loïc Le Marchand; Olle Melander; Hans Brunnstrom; Geoffrey Liu; Rayjean J Hung; Angeline S Andrew; Lambertus A Kiemeney; Shanbeh Zienolddiny; Kjell Grankvist; Mikael Johansson; Neil E Caporaso; Penella J Woll; Philip Lazarus; Matthew B Schabath; Melinda C Aldrich; Victoria L Stevens; Hongxia Ma; Guangfu Jin; Zhibin Hu; Christopher I Amos; Hongbing Shen
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-04-10       Impact factor: 4.254

5.  Genome-wide association study of INDELs identified four novel susceptibility loci associated with lung cancer risk.

Authors:  Juncheng Dai; Mingtao Huang; Christopher I Amos; Rayjean J Hung; Adonina Tardon; Angeline Andrew; Chu Chen; David C Christiani; Demetrius Albanes; Gadi Rennert; Jingyi Fan; Gary Goodman; Geoffrey Liu; John K Field; Kjell Grankvist; Lambertus A Kiemeney; Loic Le Marchand; Matthew B Schabath; Mattias Johansson; Melinda C Aldrich; Mikael Johansson; Neil Caporaso; Philip Lazarus; Stephan Lam; Stig E Bojesen; Susanne Arnold; Maria Teresa Landi; Angela Risch; H-Erich Wichmann; Heike Bickeboller; Paul Brennan; Sanjay Shete; Olle Melander; Hans Brunnstrom; Shan Zienolddiny; Penella Woll; Victoria Stevens; Zhibin Hu; Hongbing Shen
Journal:  Int J Cancer       Date:  2019-10-31       Impact factor: 7.396

6.  Cancer Progress and Priorities: Lung Cancer.

Authors:  Matthew B Schabath; Michele L Cote
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-10       Impact factor: 4.254

7.  Tumor somatic mutations also existing as germline polymorphisms may help to identify functional SNPs from genome-wide association studies.

Authors:  Ivan P Gorlov; Xiangjun Xia; Spiridon Tsavachidis; Olga Y Gorlova; Christopher I Amos
Journal:  Carcinogenesis       Date:  2020-10-15       Impact factor: 4.944

8.  Genome-wide association study of familial lung cancer.

Authors:  Jinyoung Byun; Ann G Schwartz; Christine Lusk; Angela S Wenzlaff; Mariza de Andrade; Diptasri Mandal; Colette Gaba; Ping Yang; Ming You; Elena Y Kupert; Marshall W Anderson; Younghun Han; Yafang Li; David Qian; Adrienne Stilp; Cathy Laurie; Sarah Nelson; Wenying Zheng; Rayjean J Hung; Valerie Gaborieau; James Mckay; Paul Brennan; Neil E Caporaso; Maria Teresa Landi; Xifeng Wu; John R McLaughlin; Yonathan Brhane; Yohan Bossé; Susan M Pinney; Joan E Bailey-Wilson; Christopher I Amos
Journal:  Carcinogenesis       Date:  2018-09-21       Impact factor: 4.944

9.  Identifying Putative Susceptibility Genes and Evaluating Their Associations with Somatic Mutations in Human Cancers.

Authors:  Zhishan Chen; Wanqing Wen; Alicia Beeghly-Fadiel; Xiao-Ou Shu; Virginia Díez-Obrero; Jirong Long; Jiandong Bao; Jing Wang; Qi Liu; Qiuyin Cai; Victor Moreno; Wei Zheng; Xingyi Guo
Journal:  Am J Hum Genet       Date:  2019-08-08       Impact factor: 11.025

10.  Patterns of cancer family history and genetic counseling eligibility among African Americans with breast, prostate, lung, and colorectal cancers: A Detroit Research on Cancer Survivors cohort study.

Authors:  Kristen S Purrington; Ann G Schwartz; Julie J Ruterbusch; Mark A Manning; Mrudula Nair; Angela S Wenzlaff; Stephanie S Pandolfi; Michael S Simon; Jennifer Beebe-Dimmer
Journal:  Cancer       Date:  2020-08-04       Impact factor: 6.860

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