Literature DB >> 28613875

Modeling of Polarization Transfer Kinetics in Protein Hydration Using Hyperpolarized Water.

Jihyun Kim1, Mengxiao Liu1, Christian Hilty1.   

Abstract

Water-protein interactions play a central role in protein structure, dynamics, and function. These interactions, traditionally, have been studied using nuclear magnetic resonance (NMR) by measuring chemical exchange and nuclear Overhauser effect (NOE). Polarization transferred from hyperpolarized water can result in substantial transient signal enhancements of protein resonances due to these processes. Here, we use dissolution dynamic nuclear polarization and flow-NMR for measuring the pH dependence of transferred signals to the protein trypsin. A maximum enhancement of 20 is visible in the amide proton region of the spectrum at pH 6.0, and of 47 at pH 7.5. The aliphatic region is enhanced up to 2.3 times at pH 6.0 and up to 2.5 times at pH 7.5. The time dependence of these observed signals can be modeled quantitatively using rate equations incorporating chemical exchange to amide sites and, optionally, intramolecular NOE to aliphatic protons. On the basis of these two- and three-site models, average exchange (kex) and cross-relaxation rates (σ) obtained were kex = 12 s-1, σ = -0.33 s-1 for pH 7.5 and kex = 1.8 s-1, σ = -0.72 s-1 for pH 6.0 at a temperature of 304 K. These values were validated using conventional EXSY and NOESY measurements. In general, a rapid measurement of exchange and cross-relaxation rates may be of interest for the study of structural changes of the protein occurring on the same time scale. Besides protein-water interactions, interactions with cosolvent or solutes can further be investigated using the same methods.

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Year:  2017        PMID: 28613875     DOI: 10.1021/acs.jpcb.7b03052

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Detection of Protein-Ligand Interactions by 19F Nuclear Magnetic Resonance Using Hyperpolarized Water.

Authors:  Jiandu Hu; Jihyun Kim; Christian Hilty
Journal:  J Phys Chem Lett       Date:  2022-04-24       Impact factor: 6.888

Review 2.  Hyperpolarized water as universal sensitivity booster in biomolecular NMR.

Authors:  Christian Hilty; Dennis Kurzbach; Lucio Frydman
Journal:  Nat Protoc       Date:  2022-05-11       Impact factor: 17.021

3.  Interfacing Liquid State Hyperpolarization Methods with NMR Instrumentation.

Authors:  Pierce Pham; Ratnamala Mandal; Chang Qi; Christian Hilty
Journal:  J Magn Reson Open       Date:  2022-03-10

4.  A 300-fold enhancement of imino nucleic acid resonances by hyperpolarized water provides a new window for probing RNA refolding by 1D and 2D NMR.

Authors:  Mihajlo Novakovic; Gregory L Olsen; György Pintér; Daniel Hymon; Boris Fürtig; Harald Schwalbe; Lucio Frydman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-16       Impact factor: 11.205

Review 5.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

6.  Reaction Monitoring Using SABRE-Hyperpolarized Benchtop (1 T) NMR Spectroscopy.

Authors:  Olga Semenova; Peter M Richardson; Andrew J Parrott; Alison Nordon; Meghan E Halse; Simon B Duckett
Journal:  Anal Chem       Date:  2019-05-02       Impact factor: 6.986

7.  Toward protein NMR at physiological concentrations by hyperpolarized water-Finding and mapping uncharted conformational spaces.

Authors:  Ludovica M Epasto; Kateryna Che; Fanny Kozak; Albina Selimovic; Pavel Kadeřávek; Dennis Kurzbach
Journal:  Sci Adv       Date:  2022-08-05       Impact factor: 14.957

Review 8.  Techniques and Strategies for Potential Protein Target Discovery and Active Pharmaceutical Molecule Screening in a Pandemic.

Authors:  Hongxin Yu; Chunyan Li; Xing Wang; Jingyi Duan; Na Yang; Lijuan Xie; Yu Yuan; Shanze Li; Chenghao Bi; Bin Yang; Yubo Li
Journal:  J Proteome Res       Date:  2020-10-04       Impact factor: 4.466

  8 in total

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