Literature DB >> 28608946

Genetic Encoding of Photocaged Tyrosines with Improved Light-Activation Properties for the Optical Control of Protease Function.

Ji Luo1, Jessica Torres-Kolbus1, Jihe Liu1, Alexander Deiters1.   

Abstract

We genetically encoded three new caged tyrosine analogues with improved photochemical properties by using an engineered pyrrolysyl-tRNA synthetase/tRNACUA pair in bacterial and mammalian cells. We applied the new tyrosine analogues to the photoregulation of firefly luciferase by caging its key tyrosine residue, Tyr340, and observed excellent off-to-on light switching. This reporter was then used to evaluate the activation rates of the different light-removable protecting groups in live cells. We identified the nitropiperonyl caging group as an excellent compromise between incorporation efficiency and photoactivation properties. To demonstrate applicability of the new caged tyrosines, an important proteolytic enzyme, tobacco etch virus (TEV) protease, was engineered for optical control. The ability to incorporate differently caged tyrosine analogues into proteins in live cells further expands the unnatural amino acid and optogenetic toolbox.
© 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  genetic code expansion; protease; protein engineering; synthetic biology; unnatural amino acid

Mesh:

Substances:

Year:  2017        PMID: 28608946     DOI: 10.1002/cbic.201700147

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  16 in total

1.  Cell-Lineage Tracing in Zebrafish Embryos with an Expanded Genetic Code.

Authors:  Wes Brown; Jihe Liu; Michael Tsang; Alexander Deiters
Journal:  Chembiochem       Date:  2018-05-18       Impact factor: 3.164

Review 2.  Recent advances in the optical control of protein function through genetic code expansion.

Authors:  Taylor Courtney; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2018-07-26       Impact factor: 8.822

Review 3.  Genetic Code Expansion in Animals.

Authors:  Wes Brown; Jihe Liu; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2018-09-05       Impact factor: 5.100

4.  Reversible and Tunable Photoswitching of Protein Function through Genetic Encoding of Azobenzene Amino Acids in Mammalian Cells.

Authors:  Ji Luo; Subhas Samanta; Marino Convertino; Nikolay V Dokholyan; Alexander Deiters
Journal:  Chembiochem       Date:  2018-10-02       Impact factor: 3.164

5.  Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.

Authors:  Wes Brown; Alexander Deiters
Journal:  Methods Enzymol       Date:  2019-04-30       Impact factor: 1.600

6.  Light Regulation of Enzyme Allostery through Photo-responsive Unnatural Amino Acids.

Authors:  Andrea C Kneuttinger; Kristina Straub; Philipp Bittner; Nadja A Simeth; Astrid Bruckmann; Florian Busch; Chitra Rajendran; Enrico Hupfeld; Vicki H Wysocki; Dominik Horinek; Burkhard König; Rainer Merkl; Reinhard Sterner
Journal:  Cell Chem Biol       Date:  2019-09-05       Impact factor: 8.116

Review 7.  Chemogenetic and optogenetic control of post-translational modifications through genetic code expansion.

Authors:  Wenyuan Zhou; Alexander Deiters
Journal:  Curr Opin Chem Biol       Date:  2021-04-09       Impact factor: 8.972

8.  Efficient Amber Suppression via Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.

Authors:  Eike F Joest; Christian Winter; Joshua S Wesalo; Alexander Deiters; Robert Tampé
Journal:  ACS Synth Biol       Date:  2022-01-21       Impact factor: 5.249

Review 9.  Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells.

Authors:  Alexander R Nödling; Luke A Spear; Thomas L Williams; Louis Y P Luk; Yu-Hsuan Tsai
Journal:  Essays Biochem       Date:  2019-07-03       Impact factor: 8.000

10.  Light-induced modulation of DNA recognition by the Rad4/XPC damage sensor protein.

Authors:  Amirrasoul Tavakoli; Debamita Paul; Hong Mu; Jagannath Kuchlyan; Saroj Baral; Anjum Ansari; Suse Broyde; Jung-Hyun Min
Journal:  RSC Chem Biol       Date:  2021-01-06
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