Literature DB >> 28605671

Targeted protein knockdown using small molecule degraders.

Kanak Raina1, Craig M Crews2.   

Abstract

Small molecule probes of biological systems have traditionally been designed to bind to and inhibit the active sites of their protein targets. While this class of pharmacological agents has been broadened by the development of a small number of allosteric and protein-protein interaction (PPI) inhibitors, conventional drug design still excludes 'undruggable' proteins that are neither enzymes nor receptors. Recent years have seen the emergence of new classes of small molecules that can target hitherto undruggable proteins by recruiting the cellular proteostasis machinery to selectively tag them for degradation. These molecules, especially the class known as Proteolysis Targeting Chimera (PROTACs), represent a paradigm shift in chemical genetics, but their most tantalizing potential is as novel therapeutic agents. This review briefly summarizes the preclinical development of small molecule-based protein degraders, and describes the recent improvements in the technology that have positioned PROTACs on the cusp of entering the clinic.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28605671      PMCID: PMC5584562          DOI: 10.1016/j.cbpa.2017.05.016

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  53 in total

1.  In Vivo Knockdown of Pathogenic Proteins via Specific and Nongenetic Inhibitor of Apoptosis Protein (IAP)-dependent Protein Erasers (SNIPERs).

Authors:  Nobumichi Ohoka; Keiichiro Okuhira; Masahiro Ito; Katsunori Nagai; Norihito Shibata; Takayuki Hattori; Osamu Ujikawa; Kenichiro Shimokawa; Osamu Sano; Ryokichi Koyama; Hisashi Fujita; Mika Teratani; Hirokazu Matsumoto; Yasuhiro Imaeda; Hiroshi Nara; Nobuo Cho; Mikihiko Naito
Journal:  J Biol Chem       Date:  2017-02-02       Impact factor: 5.157

Review 2.  Cornerstones of CRISPR-Cas in drug discovery and therapy.

Authors:  Christof Fellmann; Benjamin G Gowen; Pei-Chun Lin; Jennifer A Doudna; Jacob E Corn
Journal:  Nat Rev Drug Discov       Date:  2016-12-23       Impact factor: 84.694

3.  Boc3Arg-Linked Ligands Induce Degradation by Localizing Target Proteins to the 20S Proteasome.

Authors:  Yuntao Shi; Marcus J C Long; Masha M Rosenberg; Shican Li; Aimee Kobjack; Philip Lessans; Rory T Coffey; Lizbeth Hedstrom
Journal:  ACS Chem Biol       Date:  2016-10-18       Impact factor: 5.100

4.  Inhibitor mediated protein degradation.

Authors:  Marcus J C Long; Deviprasad R Gollapalli; Lizbeth Hedstrom
Journal:  Chem Biol       Date:  2012-05-25

5.  Small-molecule inhibitors of the interaction between the E3 ligase VHL and HIF1α.

Authors:  Dennis L Buckley; Jeffrey L Gustafson; Inge Van Molle; Anke G Roth; Hyun Seop Tae; Peter C Gareiss; William L Jorgensen; Alessio Ciulli; Craig M Crews
Journal:  Angew Chem Int Ed Engl       Date:  2012-10-12       Impact factor: 15.336

6.  AZD3514: a small molecule that modulates androgen receptor signaling and function in vitro and in vivo.

Authors:  Sarah A Loddick; Sarah J Ross; Andrew G Thomason; David M Robinson; Graeme E Walker; Tom P J Dunkley; Sandra R Brave; Nicola Broadbent; Natalie C Stratton; Dawn Trueman; Elizabeth Mouchet; Fadhel S Shaheen; Vivien N Jacobs; Marie Cumberbatch; Joanne Wilson; Rhys D O Jones; Robert H Bradbury; Alfred Rabow; Luke Gaughan; Chris Womack; Simon T Barry; Craig N Robson; Susan E Critchlow; Stephen R Wedge; A Nigel Brooks
Journal:  Mol Cancer Ther       Date:  2013-07-16       Impact factor: 6.261

Review 7.  Overcoming the challenges in administering biopharmaceuticals: formulation and delivery strategies.

Authors:  Samir Mitragotri; Paul A Burke; Robert Langer
Journal:  Nat Rev Drug Discov       Date:  2014-08-08       Impact factor: 84.694

8.  Design of a PROTAC that antagonizes and destroys the cancer-forming X-protein of the hepatitis B virus.

Authors:  Kristopher Montrose; Geoffrey W Krissansen
Journal:  Biochem Biophys Res Commun       Date:  2014-10-08       Impact factor: 3.575

9.  Chemical genetic control of protein levels: selective in vivo targeted degradation.

Authors:  John S Schneekloth; Fabiana N Fonseca; Michael Koldobskiy; Amit Mandal; Raymond Deshaies; Kathleen Sakamoto; Craig M Crews
Journal:  J Am Chem Soc       Date:  2004-03-31       Impact factor: 15.419

Review 10.  Oligonucleotide Therapies: The Past and the Present.

Authors:  Karin E Lundin; Olof Gissberg; C I Edvard Smith
Journal:  Hum Gene Ther       Date:  2015-08-03       Impact factor: 5.695

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  33 in total

Review 1.  Molecules targeting the androgen receptor (AR) signaling axis beyond the AR-Ligand binding domain.

Authors:  N G R Dayan Elshan; Matthew B Rettig; Michael E Jung
Journal:  Med Res Rev       Date:  2018-11-22       Impact factor: 12.944

Review 2.  Protein Degradation and the Pathologic Basis of Disease.

Authors:  John Hanna; Angel Guerra-Moreno; Jessie Ang; Yagmur Micoogullari
Journal:  Am J Pathol       Date:  2018-10-10       Impact factor: 4.307

3.  Electrochemically Enabled, Nickel-Catalyzed Amination.

Authors:  Chao Li; Yu Kawamata; Hugh Nakamura; Julien C Vantourout; Zhiqing Liu; Qinglong Hou; Denghui Bao; Jeremy T Starr; Jinshan Chen; Ming Yan; Phil S Baran
Journal:  Angew Chem Int Ed Engl       Date:  2017-09-14       Impact factor: 15.336

Review 4.  Targeted protein degradation: elements of PROTAC design.

Authors:  Stacey-Lynn Paiva; Craig M Crews
Journal:  Curr Opin Chem Biol       Date:  2019-04-17       Impact factor: 8.822

5.  Profiling CELMoD-Mediated Degradation of Cereblon Neosubstrates.

Authors:  Joel W Thompson; Thomas Clayton; Gody Khambatta; Leslie A Bateman; Christopher W Carroll; Philip P Chamberlain; Mary E Matyskiela
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Exploring the Role of Ubiquitin-Proteasome System in Parkinson's Disease.

Authors:  Tapan Behl; Sachin Kumar; Ziyad M Althafar; Aayush Sehgal; Sukhbir Singh; Neelam Sharma; Vishnu Nayak Badavath; Shivam Yadav; Saurabh Bhatia; Ahmed Al-Harrasi; Yosif Almoshari; Mohannad A Almikhlafi; Simona Bungau
Journal:  Mol Neurobiol       Date:  2022-05-03       Impact factor: 5.590

7.  MDM2-Recruiting PROTAC Offers Superior, Synergistic Antiproliferative Activity via Simultaneous Degradation of BRD4 and Stabilization of p53.

Authors:  John Hines; Schan Lartigue; Hanqing Dong; Yimin Qian; Craig M Crews
Journal:  Cancer Res       Date:  2018-11-01       Impact factor: 12.701

8.  Development and preclinical validation of a novel covalent ubiquitin receptor Rpn13 degrader in multiple myeloma.

Authors:  Yan Song; Paul M C Park; Lei Wu; Arghya Ray; Sarah Picaud; Deyao Li; Virangika K Wimalasena; Ting Du; Panagis Filippakopoulos; Kenneth C Anderson; Jun Qi; Dharminder Chauhan
Journal:  Leukemia       Date:  2019-04-08       Impact factor: 11.528

9.  Recognition of the Diglycine C-End Degron by CRL2KLHDC2 Ubiquitin Ligase.

Authors:  Domniţa-Valeria Rusnac; Hsiu-Chuan Lin; Daniele Canzani; Karena X Tien; Thomas R Hinds; Ashley F Tsue; Matthew F Bush; Hsueh-Chi S Yen; Ning Zheng
Journal:  Mol Cell       Date:  2018-12-06       Impact factor: 17.970

10.  DCAF11 Supports Targeted Protein Degradation by Electrophilic Proteolysis-Targeting Chimeras.

Authors:  Xiaoyu Zhang; Lena M Luukkonen; Christie L Eissler; Vincent M Crowley; Yu Yamashita; Michael A Schafroth; Shota Kikuchi; David S Weinstein; Kent T Symons; Brian E Nordin; Joe L Rodriguez; Thomas G Wucherpfennig; Ludwig G Bauer; Melissa M Dix; Dean Stamos; Todd M Kinsella; Gabriel M Simon; Kristen A Baltgalvis; Benjamin F Cravatt
Journal:  J Am Chem Soc       Date:  2021-03-30       Impact factor: 15.419

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