Literature DB >> 28605369

Real-time Tracking of DNA Fragment Separation by Smartphone.

Chunxian Tao1, Bo Yang1, Zhenqing Li2, Dawei Zhang1, Yoshinori Yamaguchi3.   

Abstract

Slab gel electrophoresis (SGE) is the most common method for the separation of DNA fragments; thus, it is broadly applied to the field of biology and others. However, the traditional SGE protocol is quite tedious, and the experiment takes a long time. Moreover, the chemical consumption in SGE experiments is very high. This work proposes a simple method for the separation of DNA fragments based on an SGE chip. The chip is made by an engraving machine. Two plastic sheets are used for the excitation and emission wavelengths of the optical signal. The fluorescence signal of the DNA bands is collected by smartphone. To validate this method, 50, 100, and 1,000 bp DNA ladders were separated. The results demonstrate that a DNA ladder smaller than 5,000 bp can be resolved within 12 min and with high resolution when using this method, indicating that it is an ideal substitute for the traditional SGE method.

Mesh:

Substances:

Year:  2017        PMID: 28605369      PMCID: PMC5608230          DOI: 10.3791/55926

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  15 in total

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Journal:  Electrophoresis       Date:  2001       Impact factor: 3.535

2.  Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation.

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Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

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Authors:  B Sugden; B De Troy; R J Roberts; J Sambrook
Journal:  Anal Biochem       Date:  1975-09       Impact factor: 3.365

Review 4.  Electrophoresis of DNA in human genetic diagnostics - state-of-the-art, alternatives and future prospects.

Authors:  René Gödde; Denis-Amer Akkad; Larissa Arning; Gabriele Dekomien; Julia Herchenbach; Erdmute Kunstmann; Moritz Meins; Stefan Wieczorek; Jörg T Epplen; Sabine Hoffjan
Journal:  Electrophoresis       Date:  2006-03       Impact factor: 3.535

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Authors:  W L Fangman
Journal:  Nucleic Acids Res       Date:  1978-03       Impact factor: 16.971

6.  Analysis of restriction fragments of T7 DNA and determination of molecular weights by electrophoresis in neutral and alkaline gels.

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Journal:  J Mol Biol       Date:  1977-02-15       Impact factor: 5.469

7.  Separation of chromosomal DNA molecules from yeast by orthogonal-field-alternation gel electrophoresis.

Authors:  G F Carle; M V Olson
Journal:  Nucleic Acids Res       Date:  1984-07-25       Impact factor: 16.971

8.  Interaction of cyanine dyes with nucleic acids: XXXI. Using of polymethine cyanine dyes for the visualization of DNA in agarose gels.

Authors:  B P Matselyukh; S M Yarmoluk; A B Matselyukh; V B Kovalska; I O Kocheshev; D V Kryvorotenko; S S Lukashov
Journal:  J Biochem Biophys Methods       Date:  2003-07-31

9.  A capillary electrophoresis method to explore the self-assembly of a novel polypeptide ligand with quantum dots.

Authors:  Jianhao Wang; Chencheng Zhang; Li Liu; Karunakaran A Kalesh; Lin Qiu; Shumin Ding; Minli Fu; Li-Qian Gao; Pengju Jiang
Journal:  Electrophoresis       Date:  2016-07-11       Impact factor: 3.535

10.  Agarose gel electrophoresis for the separation of DNA fragments.

Authors:  Pei Yun Lee; John Costumbrado; Chih-Yuan Hsu; Yong Hoon Kim
Journal:  J Vis Exp       Date:  2012-04-20       Impact factor: 1.355

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