Literature DB >> 28604875

Fermi resonance as a means to determine the hydrogen-bonding status of two infrared probes.

Jeffrey M Rodgers1, Rachel M Abaskharon, Bei Ding, Jianxin Chen, Wenkai Zhang, Feng Gai.   

Abstract

The C[double bond, length as m-dash]O/C[triple bond, length as m-dash]N stretching vibration arising from a carbonyl/nitrile functional group in various molecular systems has been frequently used to assess, for example, local hydrogen-bonding interactions, among other applications. However, in practice it is not always easy to ascertain whether the carbonyl or nitrile group in question is engaged in such interactions. Herein, we use 4-cyanoindole and cyclopentanone as models to show that, when a fundamental C[double bond, length as m-dash]O or C[triple bond, length as m-dash]N stretching mode is involved in Fermi resonance, the underlying vibrational coupling constant (W) is a convenient reporter of the hydrogen-bonding status of the corresponding carbonyl or nitrile group. Specifically, we find that for both groups a W value of 7.7 cm-1 or greater is indicative of their involvement in hydrogen-bonding interactions. Furthermore, we find that, as observed in similar studies, the Fermi resonance coupling leads to quantum beats in the two-dimensional infrared spectra of 4-cyanoindole in isopropanol, with a period of about 1.9 ps.

Entities:  

Year:  2017        PMID: 28604875      PMCID: PMC5538721          DOI: 10.1039/c7cp02442h

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  25 in total

1.  Vibrational Probes: From Small Molecule Solvatochromism Theory and Experiments to Applications in Complex Systems.

Authors:  Bartosz Błasiak; Casey H Londergan; Lauren J Webb; Minhaeng Cho
Journal:  Acc Chem Res       Date:  2017-03-27       Impact factor: 22.384

2.  Anharmonicities and coherent vibrational dynamics of phosphate ions in bulk H2O.

Authors:  Rene Costard; Tobias Tyborski; Benjamin P Fingerhut
Journal:  Phys Chem Chem Phys       Date:  2015-10-21       Impact factor: 3.676

3.  Vibrational solvatochromism of nitrile infrared probes: beyond the vibrational Stark dipole approach.

Authors:  Bartosz Błasiak; Andrew W Ritchie; Lauren J Webb; Minhaeng Cho
Journal:  Phys Chem Chem Phys       Date:  2016-06-21       Impact factor: 3.676

4.  Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.

Authors:  S Ramos; K J Scott; R E Horness; A L Le Sueur; M C Thielges
Journal:  Phys Chem Chem Phys       Date:  2017-04-12       Impact factor: 3.676

5.  Ester carbonyl vibration as a sensitive probe of protein local electric field.

Authors:  Ileana M Pazos; Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  Angew Chem Int Ed Engl       Date:  2014-04-30       Impact factor: 15.336

6.  A solvatochromic model calibrates nitriles' vibrational frequencies to electrostatic fields.

Authors:  Sayan Bagchi; Stephen D Fried; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2012-06-15       Impact factor: 15.419

7.  5-Cyanotryptophan as an Infrared Probe of Local Hydration Status of Proteins.

Authors:  Matthias M Waegele; Matthew J Tucker; Feng Gai
Journal:  Chem Phys Lett       Date:  2009-09-01       Impact factor: 2.328

8.  Using nitrile-derivatized amino acids as infrared probes of local environment.

Authors:  Zelleka Getahun; Cheng-Yen Huang; Ting Wang; Brenda De León; William F DeGrado; Feng Gai
Journal:  J Am Chem Soc       Date:  2003-01-15       Impact factor: 15.419

9.  Two-Dimensional Infrared Study of Vibrational Coupling between Azide and Nitrile Reporters in a RNA Nucleoside.

Authors:  Andrew J Schmitz; David G Hogle; Xin Sonia Gai; Edward E Fenlon; Scott H Brewer; Matthew J Tucker
Journal:  J Phys Chem B       Date:  2016-08-24       Impact factor: 2.991

10.  2D IR photon echo study of the anharmonic coupling in the OCN region of phenyl cyanate.

Authors:  Matthew J Tucker; Yung Sam Kim; Robin M Hochstrasser
Journal:  Chem Phys Lett       Date:  2009-02-24       Impact factor: 2.328

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  3 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Characterization of Acetonitrile Isotopologues as Vibrational Probes of Electrolytes.

Authors:  Bogdan Dereka; Nicholas H C Lewis; Jonathan H Keim; Scott A Snyder; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2021-12-28       Impact factor: 2.991

3.  Lineshape Distortions in Internal Reflection Two-Dimensional Infrared Spectroscopy: Tuning across the Critical Angle.

Authors:  Nicholas H C Lewis; Andrei Tokmakoff
Journal:  J Phys Chem Lett       Date:  2021-12-06       Impact factor: 6.475

  3 in total

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