Literature DB >> 27326899

Vibrational solvatochromism of nitrile infrared probes: beyond the vibrational Stark dipole approach.

Bartosz Błasiak1, Andrew W Ritchie, Lauren J Webb, Minhaeng Cho.   

Abstract

Systematic probing of local environments around biopolymers is important for understanding their functions. Therefore, there has been growing interest in in situ measurements of molecular granularity and heterogeneity through the systematic analysis of vibrational frequency shifts of carbonyl and nitrile infrared probes by vibrational Stark dipole theory. However, here we show that the nitrile vibrational frequency shift induced by its interaction with the surrounding molecules cannot be solely described by electric field-based theory because of the exchange-repulsion and dispersion interaction contributions. Considering a variety of molecular environments ranging from bulk solutions to protein environments, we explore the distinct scenarios of solute-environment contacts and their traces in vibrational frequency shifts. We believe that the present work could provide a set of clues that could be potentially used to design a rigorous theoretical model linking vibrational solvatochromism and molecular topology in complex heterogeneous environments.

Entities:  

Year:  2016        PMID: 27326899     DOI: 10.1039/c6cp01578f

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  14 in total

Review 1.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

2.  Heterogeneous and Highly Dynamic Interface in Plastocyanin-Cytochrome f Complex Revealed by Site-Specific 2D-IR Spectroscopy.

Authors:  Sashary Ramos; Amanda L Le Sueur; Rachel E Horness; Jonathan T Specker; Jessica A Collins; Katherine E Thibodeau; Megan C Thielges
Journal:  J Phys Chem B       Date:  2019-02-21       Impact factor: 2.991

Review 3.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

4.  Amorphous polymer dynamics and free volume element size distributions from ultrafast IR spectroscopy.

Authors:  David J Hoffman; Sebastian M Fica-Contreras; Michael D Fayer
Journal:  Proc Natl Acad Sci U S A       Date:  2020-06-08       Impact factor: 11.205

5.  Extended timescale 2D IR probes of proteins: p-cyanoselenophenylalanine.

Authors:  S Ramos; K J Scott; R E Horness; A L Le Sueur; M C Thielges
Journal:  Phys Chem Chem Phys       Date:  2017-04-12       Impact factor: 3.676

6.  Fermi resonance as a means to determine the hydrogen-bonding status of two infrared probes.

Authors:  Jeffrey M Rodgers; Rachel M Abaskharon; Bei Ding; Jianxin Chen; Wenkai Zhang; Feng Gai
Journal:  Phys Chem Chem Phys       Date:  2017-06-21       Impact factor: 3.676

7.  Origin of thiocyanate spectral shifts in water and organic solvents.

Authors:  Ruoqi Zhao; Joseph C Shirley; Euihyun Lee; Adam Grofe; Hui Li; Carlos R Baiz; Jiali Gao
Journal:  J Chem Phys       Date:  2022-03-14       Impact factor: 3.488

8.  New Insights into Quinine-DNA Binding Using Raman Spectroscopy and Molecular Dynamics Simulations.

Authors:  David Punihaole; Riley J Workman; Shiv Upadhyay; Craig Van Bruggen; Andrew J Schmitz; Theresa M Reineke; Renee R Frontiera
Journal:  J Phys Chem B       Date:  2018-10-17       Impact factor: 2.991

9.  Testing the Limitations of MD-Based Local Electric Fields Using the Vibrational Stark Effect in Solution: Penicillin G as a Test Case.

Authors:  Jacek Kozuch; Samuel H Schneider; Chu Zheng; Zhe Ji; Richard T Bradshaw; Steven G Boxer
Journal:  J Phys Chem B       Date:  2021-04-26       Impact factor: 2.991

10.  Direct local solvent probing by transient infrared spectroscopy reveals the mechanism of hydrogen-bond induced nonradiative deactivation.

Authors:  Bogdan Dereka; Eric Vauthey
Journal:  Chem Sci       Date:  2017-05-16       Impact factor: 9.825

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