Literature DB >> 28604730

Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes.

James D McKay1, Rayjean J Hung2, Younghun Han3, Xuchen Zong2, Robert Carreras-Torres1, David C Christiani4, Neil E Caporaso5, Mattias Johansson1, Xiangjun Xiao3, Yafang Li3, Jinyoung Byun3, Alison Dunning6, Karen A Pooley6, David C Qian3, Xuemei Ji3, Geoffrey Liu2, Maria N Timofeeva1, Stig E Bojesen7,8,9, Xifeng Wu10, Loic Le Marchand11, Demetrios Albanes5, Heike Bickeböller12, Melinda C Aldrich13, William S Bush14, Adonina Tardon15, Gad Rennert16, M Dawn Teare17, John K Field18, Lambertus A Kiemeney19, Philip Lazarus20, Aage Haugen21, Stephen Lam22, Matthew B Schabath23, Angeline S Andrew24, Hongbing Shen25, Yun-Chul Hong26, Jian-Min Yuan27, Pier Alberto Bertazzi28,29, Angela C Pesatori29, Yuanqing Ye10, Nancy Diao4, Li Su4, Ruyang Zhang4, Yonathan Brhane2, Natasha Leighl30, Jakob S Johansen31, Anders Mellemgaard31, Walid Saliba16, Christopher A Haiman32, Lynne R Wilkens11, Ana Fernandez-Somoano15, Guillermo Fernandez-Tardon15, Henricus F M van der Heijden19, Jin Hee Kim33, Juncheng Dai25, Zhibin Hu25, Michael P A Davies18, Michael W Marcus18, Hans Brunnström34, Jonas Manjer35, Olle Melander35, David C Muller36, Kim Overvad37, Antonia Trichopoulou38, Rosario Tumino39, Jennifer A Doherty24,40,41,42, Matt P Barnett40, Chu Chen40, Gary E Goodman43, Angela Cox44, Fiona Taylor44, Penella Woll44, Irene Brüske45, H-Erich Wichmann45,46,47, Judith Manz48, Thomas R Muley49,50, Angela Risch48,49,50,51,52, Albert Rosenberger12, Kjell Grankvist53, Mikael Johansson54, Frances A Shepherd30, Ming-Sound Tsao30, Susanne M Arnold55, Eric B Haura56, Ciprian Bolca57, Ivana Holcatova58, Vladimir Janout59, Milica Kontic60,61, Jolanta Lissowska62, Anush Mukeria63, Simona Ognjanovic64, Tadeusz M Orlowski65, Ghislaine Scelo1, Beata Swiatkowska66, David Zaridze63, Per Bakke67, Vidar Skaug21, Shanbeh Zienolddiny21, Eric J Duell68, Lesley M Butler27, Woon-Puay Koh69, Yu-Tang Gao70, Richard S Houlston71, John McLaughlin72, Victoria L Stevens73, Philippe Joubert74, Maxime Lamontagne74, David C Nickle75, Ma'en Obeidat76, Wim Timens77, Bin Zhu5, Lei Song5, Linda Kachuri2, María Soler Artigas78,79, Martin D Tobin78,79, Louise V Wain78,79, Thorunn Rafnar80, Thorgeir E Thorgeirsson80, Gunnar W Reginsson80, Kari Stefansson80, Dana B Hancock81, Laura J Bierut82, Margaret R Spitz83, Nathan C Gaddis84, Sharon M Lutz85, Fangyi Gu5, Eric O Johnson86, Ahsan Kamal3, Claudio Pikielny3, Dakai Zhu3, Sara Lindströem87, Xia Jiang88, Rachel F Tyndale89,90, Georgia Chenevix-Trench91, Jonathan Beesley91, Yohan Bossé74,92, Stephen Chanock5, Paul Brennan1, Maria Teresa Landi5, Christopher I Amos3.   

Abstract

Although several lung cancer susceptibility loci have been identified, much of the heritability for lung cancer remains unexplained. Here 14,803 cases and 12,262 controls of European descent were genotyped on the OncoArray and combined with existing data for an aggregated genome-wide association study (GWAS) analysis of lung cancer in 29,266 cases and 56,450 controls. We identified 18 susceptibility loci achieving genome-wide significance, including 10 new loci. The new loci highlight the striking heterogeneity in genetic susceptibility across the histological subtypes of lung cancer, with four loci associated with lung cancer overall and six loci associated with lung adenocarcinoma. Gene expression quantitative trait locus (eQTL) analysis in 1,425 normal lung tissue samples highlights RNASET2, SECISBP2L and NRG1 as candidate genes. Other loci include genes such as a cholinergic nicotinic receptor, CHRNA2, and the telomere-related genes OFBC1 and RTEL1. Further exploration of the target genes will continue to provide new insights into the etiology of lung cancer.

Entities:  

Mesh:

Year:  2017        PMID: 28604730      PMCID: PMC5510465          DOI: 10.1038/ng.3892

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  39 in total

1.  Replication of lung cancer susceptibility loci at chromosomes 15q25, 5p15, and 6p21: a pooled analysis from the International Lung Cancer Consortium.

Authors:  Therese Truong; Rayjean J Hung; Christopher I Amos; Xifeng Wu; Heike Bickeböller; Albert Rosenberger; Wiebke Sauter; Thomas Illig; H-Erich Wichmann; Angela Risch; Hendrik Dienemann; Rudolph Kaaks; Ping Yang; Ruoxiang Jiang; John K Wiencke; Margaret Wrensch; Helen Hansen; Karl T Kelsey; Keitaro Matsuo; Kazuo Tajima; Ann G Schwartz; Angie Wenzlaff; Adeline Seow; Chen Ying; Andrea Staratschek-Jox; Peter Nürnberg; Erich Stoelben; Jürgen Wolf; Philip Lazarus; Joshua E Muscat; Carla J Gallagher; Shanbeh Zienolddiny; Aage Haugen; Henricus F M van der Heijden; Lambertus A Kiemeney; Dolores Isla; Jose Ignacio Mayordomo; Thorunn Rafnar; Kari Stefansson; Zuo-Feng Zhang; Shen-Chih Chang; Jin Hee Kim; Yun-Chul Hong; Eric J Duell; Angeline S Andrew; Flavio Lejbkowicz; Gad Rennert; Heiko Müller; Hermann Brenner; Loïc Le Marchand; Simone Benhamou; Christine Bouchardy; M Dawn Teare; Xiaoyan Xue; John McLaughlin; Geoffrey Liu; James D McKay; Paul Brennan; Margaret R Spitz
Journal:  J Natl Cancer Inst       Date:  2010-06-14       Impact factor: 13.506

2.  GCTA: a tool for genome-wide complex trait analysis.

Authors:  Jian Yang; S Hong Lee; Michael E Goddard; Peter M Visscher
Journal:  Am J Hum Genet       Date:  2010-12-17       Impact factor: 11.025

3.  Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix.

Authors:  J Li; L Ji
Journal:  Heredity (Edinb)       Date:  2005-09       Impact factor: 3.821

4.  Telomere length in prospective and retrospective cancer case-control studies.

Authors:  Karen A Pooley; Manjinder S Sandhu; Jonathan Tyrer; Mitul Shah; Kristy E Driver; Robert N Luben; Sheila A Bingham; Bruce A J Ponder; Paul D P Pharoah; Kay-Tee Khaw; Douglas F Easton; Alison M Dunning
Journal:  Cancer Res       Date:  2010-04-15       Impact factor: 12.701

5.  Analysis of hereditary component of cancer by use of a familial index by site.

Authors:  B Lindelöf; G Eklund
Journal:  Lancet       Date:  2001-11-17       Impact factor: 79.321

6.  Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.

Authors:  Qing Lan; Chao A Hsiung; Keitaro Matsuo; Yun-Chul Hong; Adeline Seow; Zhaoming Wang; H Dean Hosgood; Kexin Chen; Jiu-Cun Wang; Nilanjan Chatterjee; Wei Hu; Maria Pik Wong; Wei Zheng; Neil Caporaso; Jae Yong Park; Chien-Jen Chen; Yeul Hong Kim; Young Tae Kim; Maria Teresa Landi; Hongbing Shen; Charles Lawrence; Laurie Burdett; Meredith Yeager; Jeffrey Yuenger; Kevin B Jacobs; I-Shou Chang; Tetsuya Mitsudomi; Hee Nam Kim; Gee-Chen Chang; Bryan A Bassig; Margaret Tucker; Fusheng Wei; Zhihua Yin; Chen Wu; She-Juan An; Biyun Qian; Victor Ho Fun Lee; Daru Lu; Jianjun Liu; Hyo-Sung Jeon; Chin-Fu Hsiao; Jae Sook Sung; Jin Hee Kim; Yu-Tang Gao; Ying-Huang Tsai; Yoo Jin Jung; Huan Guo; Zhibin Hu; Amy Hutchinson; Wen-Chang Wang; Robert Klein; Charles C Chung; In-Jae Oh; Kuan-Yu Chen; Sonja I Berndt; Xingzhou He; Wei Wu; Jiang Chang; Xu-Chao Zhang; Ming-Shyan Huang; Hong Zheng; Junwen Wang; Xueying Zhao; Yuqing Li; Jin Eun Choi; Wu-Chou Su; Kyong Hwa Park; Sook Whan Sung; Xiao-Ou Shu; Yuh-Min Chen; Li Liu; Chang Hyun Kang; Lingmin Hu; Chung-Hsing Chen; William Pao; Young-Chul Kim; Tsung-Ying Yang; Jun Xu; Peng Guan; Wen Tan; Jian Su; Chih-Liang Wang; Haixin Li; Alan Dart Loon Sihoe; Zhenhong Zhao; Ying Chen; Yi Young Choi; Jen-Yu Hung; Jun Suk Kim; Ho-Il Yoon; Qiuyin Cai; Chien-Chung Lin; In Kyu Park; Ping Xu; Jing Dong; Christopher Kim; Qincheng He; Reury-Perng Perng; Takashi Kohno; Sun-Seog Kweon; Chih-Yi Chen; Roel Vermeulen; Junjie Wu; Wei-Yen Lim; Kun-Chieh Chen; Wong-Ho Chow; Bu-Tian Ji; John K C Chan; Minjie Chu; Yao-Jen Li; Jun Yokota; Jihua Li; Hongyan Chen; Yong-Bing Xiang; Chong-Jen Yu; Hideo Kunitoh; Guoping Wu; Li Jin; Yen-Li Lo; Kouya Shiraishi; Ying-Hsiang Chen; Hsien-Chih Lin; Tangchun Wu; Yi-Long Wu; Pan-Chyr Yang; Baosen Zhou; Min-Ho Shin; Joseph F Fraumeni; Dongxin Lin; Stephen J Chanock; Nathaniel Rothman
Journal:  Nat Genet       Date:  2012-11-11       Impact factor: 38.330

7.  Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk.

Authors:  Kyle M Walsh; Veryan Codd; Ivan V Smirnov; Terri Rice; Paul A Decker; Helen M Hansen; Thomas Kollmeyer; Matthew L Kosel; Annette M Molinaro; Lucie S McCoy; Paige M Bracci; Belinda S Cabriga; Melike Pekmezci; Shichun Zheng; Joseph L Wiemels; Alexander R Pico; Tarik Tihan; Mitchell S Berger; Susan M Chang; Michael D Prados; Daniel H Lachance; Brian Patrick O'Neill; Hugues Sicotte; Jeanette E Eckel-Passow; Pim van der Harst; John K Wiencke; Nilesh J Samani; Robert B Jenkins; Margaret R Wrensch
Journal:  Nat Genet       Date:  2014-06-08       Impact factor: 38.330

8.  Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease.

Authors:  Luke Jostins; Stephan Ripke; Rinse K Weersma; Richard H Duerr; Dermot P McGovern; Ken Y Hui; James C Lee; L Philip Schumm; Yashoda Sharma; Carl A Anderson; Jonah Essers; Mitja Mitrovic; Kaida Ning; Isabelle Cleynen; Emilie Theatre; Sarah L Spain; Soumya Raychaudhuri; Philippe Goyette; Zhi Wei; Clara Abraham; Jean-Paul Achkar; Tariq Ahmad; Leila Amininejad; Ashwin N Ananthakrishnan; Vibeke Andersen; Jane M Andrews; Leonard Baidoo; Tobias Balschun; Peter A Bampton; Alain Bitton; Gabrielle Boucher; Stephan Brand; Carsten Büning; Ariella Cohain; Sven Cichon; Mauro D'Amato; Dirk De Jong; Kathy L Devaney; Marla Dubinsky; Cathryn Edwards; David Ellinghaus; Lynnette R Ferguson; Denis Franchimont; Karin Fransen; Richard Gearry; Michel Georges; Christian Gieger; Jürgen Glas; Talin Haritunians; Ailsa Hart; Chris Hawkey; Matija Hedl; Xinli Hu; Tom H Karlsen; Limas Kupcinskas; Subra Kugathasan; Anna Latiano; Debby Laukens; Ian C Lawrance; Charlie W Lees; Edouard Louis; Gillian Mahy; John Mansfield; Angharad R Morgan; Craig Mowat; William Newman; Orazio Palmieri; Cyriel Y Ponsioen; Uros Potocnik; Natalie J Prescott; Miguel Regueiro; Jerome I Rotter; Richard K Russell; Jeremy D Sanderson; Miquel Sans; Jack Satsangi; Stefan Schreiber; Lisa A Simms; Jurgita Sventoraityte; Stephan R Targan; Kent D Taylor; Mark Tremelling; Hein W Verspaget; Martine De Vos; Cisca Wijmenga; David C Wilson; Juliane Winkelmann; Ramnik J Xavier; Sebastian Zeissig; Bin Zhang; Clarence K Zhang; Hongyu Zhao; Mark S Silverberg; Vito Annese; Hakon Hakonarson; Steven R Brant; Graham Radford-Smith; Christopher G Mathew; John D Rioux; Eric E Schadt; Mark J Daly; Andre Franke; Miles Parkes; Severine Vermeire; Jeffrey C Barrett; Judy H Cho
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

9.  Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.

Authors:  Yufei Wang; James D McKay; Thorunn Rafnar; Zhaoming Wang; Maria N Timofeeva; Peter Broderick; Xuchen Zong; Marina Laplana; Yongyue Wei; Younghun Han; Amy Lloyd; Manon Delahaye-Sourdeix; Daniel Chubb; Valerie Gaborieau; William Wheeler; Nilanjan Chatterjee; Gudmar Thorleifsson; Patrick Sulem; Geoffrey Liu; Rudolf Kaaks; Marc Henrion; Ben Kinnersley; Maxime Vallée; Florence LeCalvez-Kelm; Victoria L Stevens; Susan M Gapstur; Wei V Chen; David Zaridze; Neonilia Szeszenia-Dabrowska; Jolanta Lissowska; Peter Rudnai; Eleonora Fabianova; Dana Mates; Vladimir Bencko; Lenka Foretova; Vladimir Janout; Hans E Krokan; Maiken Elvestad Gabrielsen; Frank Skorpen; Lars Vatten; Inger Njølstad; Chu Chen; Gary Goodman; Simone Benhamou; Tonu Vooder; Kristjan Välk; Mari Nelis; Andres Metspalu; Marcin Lener; Jan Lubiński; Mattias Johansson; Paolo Vineis; Antonio Agudo; Francoise Clavel-Chapelon; H Bas Bueno-de-Mesquita; Dimitrios Trichopoulos; Kay-Tee Khaw; Mikael Johansson; Elisabete Weiderpass; Anne Tjønneland; Elio Riboli; Mark Lathrop; Ghislaine Scelo; Demetrius Albanes; Neil E Caporaso; Yuanqing Ye; Jian Gu; Xifeng Wu; Margaret R Spitz; Hendrik Dienemann; Albert Rosenberger; Li Su; Athena Matakidou; Timothy Eisen; Kari Stefansson; Angela Risch; Stephen J Chanock; David C Christiani; Rayjean J Hung; Paul Brennan; Maria Teresa Landi; Richard S Houlston; Christopher I Amos
Journal:  Nat Genet       Date:  2014-06-01       Impact factor: 38.330

Review 10.  The relationship between COPD and lung cancer.

Authors:  A L Durham; I M Adcock
Journal:  Lung Cancer       Date:  2015-08-29       Impact factor: 5.705

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  172 in total

1.  A Viral Exposure Signature Defines Early Onset of Hepatocellular Carcinoma.

Authors:  Jinping Liu; Wei Tang; Anuradha Budhu; Marshonna Forgues; Maria O Hernandez; Julián Candia; Yujin Kim; Elise D Bowman; Stefan Ambs; Yongmei Zhao; Bao Tran; Xiaolin Wu; Christopher Koh; Pallavi Surana; T Jake Liang; Maria Guarnera; Dean Mann; Manoj Rajaure; Tim F Greten; Zhanwei Wang; Herbert Yu; Xin Wei Wang
Journal:  Cell       Date:  2020-06-10       Impact factor: 41.582

2.  Trait Insights Gained by Comparing Genome-Wide Association Study Results using Different Chronic Obstructive Pulmonary Disease Definitions.

Authors:  Jaehyun Joo; Brian D Hobbs; Michael H Cho; Blanca E Himes
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2020-05-30

3.  Global, pathway and gene coverage of three Illumina arrays with respect to inflammatory and immune-related pathways.

Authors:  Viola Tozzi; Albert Rosenberger; Dieter Kube; Heike Bickeböller
Journal:  Eur J Hum Genet       Date:  2019-06-21       Impact factor: 4.246

4.  Evaluation of a weighted genetic risk score for the prediction of biomarkers of CYP2A6 activity.

Authors:  Ahmed El-Boraie; Taraneh Taghavi; Meghan J Chenoweth; Koya Fukunaga; Taisei Mushiroda; Michiaki Kubo; Caryn Lerman; Nicole L Nollen; Neal L Benowitz; Rachel F Tyndale
Journal:  Addict Biol       Date:  2019-02-27       Impact factor: 4.280

5.  Response to: Prenatal smoke exposure, DNA methylation and a link between DRD1 and lung cancer.

Authors:  Rebecca C Richmond; Matthew Suderman; Ryan Langdon; Caroline L Relton; George Davey Smith
Journal:  Int J Epidemiol       Date:  2019-08-01       Impact factor: 7.196

6.  Estimating SNP-Based Heritability and Genetic Correlation in Case-Control Studies Directly and with Summary Statistics.

Authors:  Omer Weissbrod; Jonathan Flint; Saharon Rosset
Journal:  Am J Hum Genet       Date:  2018-07-05       Impact factor: 11.025

7.  Germline Features Associated with Immune Infiltration in Solid Tumors.

Authors:  Sahar Shahamatdar; Meng Xiao He; Matthew A Reyna; Alexander Gusev; Saud H AlDubayan; Eliezer M Van Allen; Sohini Ramachandran
Journal:  Cell Rep       Date:  2020-03-03       Impact factor: 9.423

8.  Assessing thyroid cancer risk using polygenic risk scores.

Authors:  Sandya Liyanarachchi; Julius Gudmundsson; Egil Ferkingstad; Huiling He; Jon G Jonasson; Vinicius Tragante; Folkert W Asselbergs; Li Xu; Lambertus A Kiemeney; Romana T Netea-Maier; Jose I Mayordomo; Theo S Plantinga; Hannes Hjartarson; Jon Hrafnkelsson; Erich M Sturgis; Pamela Brock; Fadi Nabhan; Gudmar Thorleifsson; Matthew D Ringel; Kari Stefansson; Albert de la Chapelle
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-04       Impact factor: 11.205

9.  Elevated Platelet Count Appears to Be Causally Associated with Increased Risk of Lung Cancer: A Mendelian Randomization Analysis.

Authors:  Ying Zhu; Yongyue Wei; Ruyang Zhang; Xuesi Dong; Sipeng Shen; Yang Zhao; Jianling Bai; Demetrius Albanes; Neil E Caporaso; Maria Teresa Landi; Bin Zhu; Stephen J Chanock; Fangyi Gu; Stephen Lam; Ming-Sound Tsao; Frances A Shepherd; Adonina Tardon; Ana Fernández-Somoano; Guillermo Fernandez-Tardon; Chu Chen; Matthew J Barnett; Jennifer Doherty; Stig E Bojesen; Mattias Johansson; Paul Brennan; James D McKay; Robert Carreras-Torres; Thomas Muley; Angela Risch; Heunz-Erich Wichmann; Heike Bickeboeller; Albert Rosenberger; Gad Rennert; Walid Saliba; Susanne M Arnold; John K Field; Michael P A Davies; Michael W Marcus; Xifeng Wu; Yuanqing Ye; Loic Le Marchand; Lynne R Wilkens; Olle Melander; Jonas Manjer; Hans Brunnström; Rayjean J Hung; Geoffrey Liu; Yonathan Brhane; Linda Kachuri; Angeline S Andrew; Eric J Duell; Lambertus A Kiemeney; Erik Hfm van der Heijden; Aage Haugen; Shanbeh Zienolddiny; Vidar Skaug; Kjell Grankvist; Mikael Johansson; Penella J Woll; Angela Cox; Fiona Taylor; Dawn M Teare; Philip Lazarus; Matthew B Schabath; Melinda C Aldrich; Richard S Houlston; John McLaughlin; Victoria L Stevens; Hongbing Shen; Zhibin Hu; Juncheng Dai; Christopher I Amos; Younghun Han; Dakai Zhu; Gary E Goodman; Feng Chen; David C Christiani
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2019-01-30       Impact factor: 4.254

10.  Telomere Length and Lung Cancer Mortality among Heavy Smokers.

Authors:  Jennifer A Doherty; Laurie Grieshober; John R Houck; Matthew J Barnett; Jean De Dieu Tapsoba; Mark Thornquist; Ching-Yun Wang; Gary E Goodman; Chu Chen
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2018-05-09       Impact factor: 4.254

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