| Literature DB >> 28603604 |
Abstract
BACKGROUND: Antimicrobial resistant Salmonella strains are a direct threat to human health when this resistance interferes with treatment and an indirect threat when resistance can be transferred to other human pathogens. The objective of the present study was to characterize antimicrobial resistant non-typhoidal Salmonella (NTS) isolates recovered from poultry industries, including a description of genetic diversity and virulence profiles.Entities:
Keywords: Molecular characterization; Non-typhoidal Salmonella; Resistance
Year: 2017 PMID: 28603604 PMCID: PMC5465467 DOI: 10.1186/s13620-017-0095-8
Source DB: PubMed Journal: Ir Vet J ISSN: 0368-0762 Impact factor: 2.146
Distribution of 93 antimicrobial resistant Salmonella isolates derived from poultry industries in KoreaThe 17 chicken slaughter houses, 9 duck slaughter houses, 8 commercial layer farms and 3 retail markets were designated C1 ~ C17, D1 ~ D9, L1 ~ L8 and R1 ~ R3, respectively
|
| No | Source | Place | Year | Resistance pattern (n) |
|---|---|---|---|---|---|
|
| 1 | Feces | L6 | 2014 | AMP-TE (1) |
| 1 | Egg belts | L2 | 2013 | CF-NA (1) | |
|
| 1 | Egg belts | L3 | 2013 | CF-NA-S (1) |
| 1 | Egg shell | L2 | 2013 | CF-NA (1) | |
| 5 | Egg shell | L3 | 2013 | S (5) | |
| 1 | Feeder | L2 | 2013 | S (1) | |
| 1 | Feces | L2 | 2013 | S (1) | |
| 1 | Feces | L3 | 2013 | S (1) | |
|
| 1 | Chilled duck carcasses | D1 | 2011 | AM-CF-S (1) |
|
| 1 | Egg shell | R1 | 2013 | AM (1) |
| 1 | Egg shell | R2 | 2013 | AM (1) | |
| 1 | Feces | L5 | 2013 | AM (1) | |
| 1 | Egg shell | L4 | 2013 | AM (1) | |
| 1 | Dust | L5 | 2013 | AM (1) | |
|
| 1 | Chilled chicken carcasses | C15 | 2011 | C-CF-S (1) |
|
| 1 | Chicken chillers | C2 | 2008 | NA (1) |
| 1 | Chicken chillers | C3 | 2008 | NA-S-TE (1) | |
| 2 | Chicken chillers | C4 | 2008 | NA (2) | |
| 2 | Chicken chillers | C5 | 2008 | AM-NA-S (1), AM-C-NA-S-TE (1) | |
| 1 | Chilled chicken carcasses | C1 | 2008 | NA (1) | |
| 5 | Chilled chicken carcasses | C4 | 2008 | NA (5) | |
| 5 | Chilled chicken carcasses | C5 | 2008 | AM-NA-S (3), AM-CF-NA-S (2) | |
| 1 | Chicken chillers | C6 | 2011 | AM-C-CF-NA-S (1) | |
| 1 | Chicken chillers | C7 | 2011 | CF-NA (1) | |
| 1 | Chicken chillers | C8 | 2011 | CF-NA-S (1) | |
| 2 | Duck chillers | D1 | 2010 | TE (1), CF-S-TE (1) | |
| 1 | Duck chillers | D2 | 2011 | AM-C-CF-NA (1) | |
|
| 1 | Chilled chicken carcasses | C14 | 2011 | AMP-TE (1) |
|
| 2 | Duck chillers | D3 | 2008 | AM-CF-S-TE (1), AM-CF-KAN-S-TE (1) |
| 1 | Duck chillers | D9 | 2011 | CF-TE (1) | |
| 1 | Chilled duck carcasses | D1 | 2011 | CF-S-TE (1) | |
| 1 | Chilled duck carcasses | D3 | 2008 | KAN-S (1) | |
| 2 | Chilled duck carcasses | D4 | 2008 | S-TE (2) | |
|
| 1 | Chilled duck carcasses | D4 | 2008 | KAN-S-TE (1) |
|
| 1 | Chilled chicken carcasses | C8 | 2011 | CF-NA-S (1) |
| 1 | Egg shell | L1 | 2014 | NA (1) | |
|
| 1 | Chicken chillers | C15 | 2011 | C (1) |
|
| 1 | Dust | L7 | 2014 | NA (1) |
|
| 1 | Chilled duck carcasses | D3 | 2008 | AM-CF-S-TE (1) |
|
| 3 | Chicken chillers | C9 | 2011 | S (2), AM-C-CAZ-CF-CTX-NA-TE (1) |
|
| 2 | Chilled duck carcasses | D5 | 2010 | CF-S (1), S (1) |
| 1 | Feces | L3 | 2013 | CF (1) | |
|
| 1 | Chicken chillers | C1 | 2008 | NA (1) |
| 1 | Chicken chillers | C9 | 2008 | NA (1) | |
| 1 | Chicken chillers | C11 | 2011 | CF-NA (1) | |
| 1 | Chicken chillers | C12 | 2011 | CF-NA (1) | |
| 3 | Chilled chicken carcasses | C9 | 2008 | NA (3) | |
| 1 | Chilled chicken carcasses | C10 | 2011 | NA (1) | |
|
| 1 | Chilled duck carcasses | D1 | 2011 | S-TE (1) |
|
| 2 | Chicken chillers | C10 | 2011 | NA (2) |
| 2 | Chilled chicken carcasses | C10 | 2011 | AM-CF-TE (1), CF-NA (1) | |
|
| 1 | Chilled duck carcasses | D4 | 2008 | S-TE (1) |
|
| 1 | Chilled duck carcasses | D8 | 2011 | CF-S (1) |
|
| 1 | Chicken chillers | C9 | 2008 | NA (1) |
| 1 | Chicken chillers | C17 | 2011 | CF-NA-S (1) | |
| 1 | Chilled chicken carcasses | C9 | 2008 | NA (1) | |
| 1 | Chilled chicken carcasses | C13 | 2011 | NA (1) | |
| 1 | Chilled chicken carcasses | C16 | 2011 | AM (1) | |
| 1 | Dust | L8 | 2014 | GEN-NA-S (1) | |
|
| 2 | Chicken chillers | C9 | 2011 | AM-CF-SXT (1) |
|
| 1 | Chilled chicken carcasses | C7 | 2011 | CF (1) |
|
| 1 | Egg contents | R3 | 2013 | CF (1) |
|
| 1 | Chilled chicken carcasses | C10 | 2011 | CTX (1) |
| 1 | Duck chillers | D1 | 2010 | CF-TE (1) | |
| 1 | Duck chillers | D3 | 2008 | S-TE (1) | |
| 1 | Chilled duck carcasses | D2 | 2011 | CF (1) | |
| 1 | Chilled duck carcasses | D6 | 2011 | S-TE (1) | |
|
| 1 | Chilled duck carcasses | D6 | 2011 | CF-S-TE (1) |
Primers used in PCR for detection of virulence genes in antimicrobial resistant non-typhoidal Salmonella
| Primer | Broad function (gene function) | Sequence (5’ to 3’) | Referance |
|---|---|---|---|
|
| Host recognition/invasion (type III secretion system appratus) | F-CTGGCGGTGGGTTTTGTTGTCTTCTCTATT | Skyberg et al., (2006) [ |
| R-AGTTTCTCCCCCTCTTCATGCGTTACCC | |||
|
| Host recognition/invasion (type III secretion system appratus) | F-TTTTTGGCAATGCATCAGGGAACA | Skyberg et al., (2006) [ |
| R-GGCGAAAGCGGGGACGGTATT | |||
|
| Host recognition/invasion (type III secretion system appratus) | F-GCCCGAGCAGCCTGAGAAGTTAGAAA | Skyberg et al., (2006) [ |
| R-TGAAATGAGCGCCCCTTGAGCCAGTC | |||
|
| Host recognition/invasion (type III secretion system appratus) | F-CGGACCGGCCAGCAACAAAACAAGAAGAAG | Skyberg et al., (2006) [ |
| R-TAGTGATGCCCGTTATGCGTGAGTGTATT | |||
|
| Host recognition/invasion (outer membrane channel protein) | F-TACCCAGGCGCAAAAAGAGGCTATC | Skyberg et al., (2006) [ |
| R-CCGCGTTATCCAGGTTGTTGC | |||
|
| Host recognition/invasion (invasion-associated secreted protein) | F-CATAGCGCCTTTTCTTCAGG | Suez et al., (2013) [ |
| R-ATGCCTGCTGATGTTGATTG | |||
|
| Host recognition/invasion (type III secretion system effector protein) | F-CGCCATCATCAGTAACCGCC | Suez et al., (2013) [ |
| R-CTGCTGACCACATCCTCCC | |||
|
| Host recognition/invasion (type III secretion system effector protein) | F-TATCAATCTCAAATCATGG | Suez et al., (2013) [ |
| R-CGCGTTTATATCATACGTTTGC | |||
|
| Host recognition/invasion (type III secretion system effector protein) | F-GGTCACAGGACACGTTCTACG | Suez et al., (2013) [ |
| R-GCGCTTCTTCGTAATTTTCC | |||
|
| Host recognition/invasion (toxin-like protein) | F-ACAACTGTCGCATCTCGCCCCGTCATT | Skyberg et al., (2006) [ |
| R-CAATTTGCGTGGGTTCTGTAGGTGCGAGT | |||
|
| Host recognition/invasion (hemolysis-inducing protein) | F-GCGTGATTGAAGGGAAATTG | Suez et al., (2013) [ |
| R-CGAAAAGCGTCTTCTTACCG | |||
|
| Host recognition/invasion (fimbrial protein) | F-GCCCCGCCTGAAGCCTGTGTTGC | Skyberg et al., (2006) [ |
| R-AGGTCGCCGCTGTTTGAGGTTGGATA | |||
|
| Host recognition/invasion (fimbial protein) | F-TAAGCCACTGCGAAAGATGC | Suez et al., (2013) [ |
| R-GCGTGAACTCCAAAAACCCG | |||
|
| Host recognition/invasion (fimbrial protein) | F-TCGCTATGTTTGCATGTGGT | Suez et al., (2013) [ |
| R-TTCAGGAACAGCCTCGAAGT | |||
|
| Entry into nonphagocytic cells (type III secretion system appratus) | F-AAAAGCCGTGGAATCCGTTAGTGAAGT | Skyberg et al., (2006) [ |
| R-CAGCGCTGGGGATTACCGTTTTG | |||
|
| Entry into nonphagocytic cells (translocation machinery component) | F-GGACGCCGCCCGGGAAAAACTCTC | Skyberg et al., (2006) [ |
| R-ACACTCCCGTCGCCGCCTTCACAA | |||
|
| Survival within macrophage (outer membrane secretory protein) | F-CCAGGGGTCGTTAGTGTATTGCGTGAGATG | Skyberg et al., (2006) [ |
| R-CGCGTAACAAAGAACCCGTAGTGATGGATT | |||
|
| Survival within macrophage (macrophage survival protein) | F-GCCAGGCGCACGCGAAATCATCC | Skyberg et al., (2006) [ |
| R-GCGACCAGCCACATATCAGCCTCTTCAAAC | |||
|
| Survival within macrophage (virulence membrane protein) | F-CGCCTTTTCCGTGGGGTATGC | Skyberg et al., (2006) [ |
| R-GAAGCCGTTTATTTTTGTAGAGGAGATGTT | |||
|
| Survival within macrophage (periplasmic Cu/Zn superoxide dismutase) | F-ATGACACCACAGGCAAAACG | Suez et al., (2013) [ |
| R-AGATGAACGATGCCCTGTCC | |||
|
| Growth within host (PTS galactitol transporter subunit IIC) | F-ATTGGTATCGGCTTCGTGGG | Suez et al., (2013) [ |
| R-ATCCCCAGCCAGTATGAACC | |||
|
| Growth within host (ADP-ribosylating toxin) | F-CTATCAGCCCCGCACGGAGAGCAGTTTTTA | Skyberg et al., (2006) [ |
| R-GGAGGAGGCGGTGGCGGTGGCATCATA | |||
|
| Iron acquisition (permease) | F-CAGTATATGCTCAACGCGATGTGGGTCTCC | Skyberg et al., (2006) [ |
| R-CGGGGCGAAAATAAAGGCTGTGATGAAC | |||
|
| Iron acquisition (sidrophore) | F-ACTGGCACGGCTCGCTGTCGCTCTAT | Skyberg et al., (2006) [ |
| R-CGCTTTACCGCCGTTCTGCCACTGC | |||
| sifA | Filamentous structure formation (secreted effector protein) | F-TTTGCCGAACGCGCCCCCACACG | Skyberg et al., (2006) [ |
| R-GTTGCCTTTTCTTGCGCTTTCCACCCATCT | |||
| STM 2759 | Putative dipeptice/oligopetide/nikel ABC-type transport systems | F-ACCATTTTCACCTGGGCTCC | Suez et al., (2013) [ |
| R-CGTTCAGGTTTTGTCGCTGG |
Fig. 1The ERIC-PCR analysis of the non-typhoidal Salmonella from Korean poultry industry is displayed using dendrograms generated by Bionumerics software. The vertical line shows the delineation level of 80%. The red color indicates the presence of the gene while the pink color indicates the absence of the gene. The dark blue color indicates resistance to the corresponding antibiotic while the light blue color indicates susceptibility. The 17 chicken slaughter houses, nine duck slaughter houses, eight commercial layer farms and three retail markets were designated C1 ~ C17, D1 ~ D9, L1 ~ L8, R1 ~ R3, respectively. AM ampicillin, C choloramphenicol, CAZ ceftazidime, CIP ciprofloxacin, CF cephalothin, CTX cefotaxime, GM gentamicin, K kanamycin, NA nalidixic acid, S streptomycin, STX trimethoprim/sulfamethoxazole, TE tetracycline