| Literature DB >> 28599000 |
Esther Andrea Kukielka1, Beatriz Martínez-López1, Daniel Beltrán-Alcrudo2.
Abstract
Live pig trade patterns, drivers and characteristics, particularly in backyard predominant systems, remain largely unexplored despite their important contribution to the spread of infectious diseases in the swine industry. A better understanding of the pig trade dynamics can inform the implementation of risk-based and more cost-effective prevention and control programs for swine diseases. In this study, a semi-structured questionnaire elaborated by FAO and implemented to 487 farmers was used to collect data regarding basic characteristics about pig demographics and live-pig trade among villages in the country of Georgia, where very scarce information is available. Social network analysis and exponential random graph models were used to better understand the structure, contact patterns and main drivers for pig trade in the country. Results indicate relatively infrequent (a total of 599 shipments in one year) and geographically localized (median Euclidean distance between shipments = 6.08 km; IQR = 0-13.88 km) pig movements in the studied regions. The main factors contributing to live-pig trade movements among villages were being from the same region (i.e., local trade), usage of a middleman or a live animal market to trade live pigs by at least one farmer in the village, and having a large number of pig farmers in the village. The identified villages' characteristics and structural network properties could be used to inform the design of more cost-effective surveillance systems in a country which pig industry was recently devastated by African swine fever epidemics and where backyard production systems are predominant.Entities:
Mesh:
Year: 2017 PMID: 28599000 PMCID: PMC5466301 DOI: 10.1371/journal.pone.0178904
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1A: Number of farmers (n = 487) interviewed per region (n = 4), number of pigs shipped and number of shipments within region in Georgia, as reported by farmers during a 12 months’ scope questionnaire; B: Monthly frequency of shipments (bars) and median number of pigs transported per shipment (dots), C: Network visualization.
Colors of the regions in the map correspond to colors of the network. UK = Unknown; Pig image = Total number of pigs shipped within region; Truck image = Total number of shipments within region.
Glossary table of ERGM related terms.
| Term | Definition |
|---|---|
| Degeneracy | When the fitted model suggests unlikely probabilities such as zero (empty graph, where no ties occur) or one (complete graph, where all possible ties occur) to the estimates of the model. These suggested probabilities do most likely fail to correctly fit the observed model; thus, the maximum likelihood estimator algorithm does not converge or offers an erratic solution. [ |
| Dyad dependent terms (endogenous)—structural predictors | These terms imply that ties between villages depend on attributes of the network as a whole, instead of depending only on the individual attributes of the villages [ |
| Dyad independent (exogenous) terms—edge and node level predictors | These terms imply that ties between villages depend only on the individual attributes (characteristics/qualities) of the villages themselves [ |
| Geometrically weighted degree (GWD) | Structural predictor that negatively weights high degree nodes, and positively weights low degree nodes [ |
| Geometrically weighted dyad-wise shared partnership (GWDSP) | Structural predictor that measures how likely two villages (A and B) that have another village (C) in common are to have another village (D) in common, regardless of whether there is a tie that links A and B or not [ |
| Geometrically weighted edgewise shared partnership (GWESP) | Structural predictor that measures how likely two villages (A and B) that have another village (C) in common are to have another village (D) in common, when there is a |
| Edge-wise shared partners statistic | A statistic that explains the tendency of villages that trade amongst themselves to also trade with multiple shared villages [ |
| Minimum geodesic distance statistic | A statistic that represents the shortest number of shipments needed to connect two villages [ |
Network metrics of the pig movement network at the village level in four regions of Georgia.
| Network metrics | Value | Meaning |
|---|---|---|
| Diameter | 9 | Greater value of the smallest number of contacts required to connect any two villages of our network [ |
| Average path length | 3.4 | Average distance between all pairs of villages in the network [ |
| Density | 0.023 | Ratio between the number of contacts between villages in the network and the number of all possible contacts, if all villages were to be connected. It measures how intertwined the network is [ |
| Indegree assortativity | 0.088 | Pearson correlation coefficient of the indegree of villages that connect with each other. |
| Outdegree assortativity | 0.091 | Pearson correlation coefficient of the outdegree of villages that connect with each other. |
| Global transitivity | 0.088 | Proportion of the number of open triads over the number of close and open triads. It measures the tendency of villages to be clustered together, regarding trade connections [ |
Variables retained and results of the three step ERGM construction process to model the probability of trade among villages in Georgia as a function of village and network characteristics.
NA = not applicable; x = node/edge attributes; Xi = vector of node/edge attributes; Si = vector of structural attributes; OR = Odds Ratio; CI = Confidence Interval.
| ERGM terms | Null model | Univariate analysis | Final model |
|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | |
| Edges | 0.0078 | 0.00068 (0.0004–0.001) | 0.0004 (0.0002–0.0008) |
| Region | NA | 22 (12.7–38.2) | 13.6 (7.9–23.50) |
| Presence Middleman | NA | 1.59 (1.29–1.95) | 1.5 (1.23–1.82) |
| Presence LAM | NA | 1.82 (1.47–2.27) | 1.78 (1.42–2.23) |
| Altitude difference | NA | 0.998 (0.997–0.999) | 0.998 (0.9978–0.999) |
| Farmers per village | NA | 1.2 (1.1–1.3) | 1.18 (1.09–1.28) |
| Cyclicalties | NA | NA | 1.36 (1.07–1.74) |
| Isolates | NA | NA | 0.15 (0.08–0.31) |
| Mutual | NA | NA | 43 (25–74) |
| AIC | 2402 | 1838 | 1661 |
| BIC | 2411 | 1887 | 1734 |
Fig 2Graphical comparison between the observed (A) and one simulated network (B), obtained through the use of exponential random graph models of the swine trade industry in Georgia, during a twelve-month period.
Node coordinates were left fixed for a better visualization of simulated shipments.
Fig 3Frequency distribution of the studied goodness of fit diagnostic parameters of the m2 (final) exponential random graph model of the swine trade industry in Georgia, during a twelve-month period.
Black lines represent the observed data. Boxplots cover the values of 100 randomly-simulated networks that conform to the model; whiskers represent the 95% CI.
Fig 4Trace plots (left column) and density plots (right column) of the MCMC diagnostics of the ERGM used to model the probability of trade in the population of villages contained in our four regions of study area in Georgia as a function of both village and network characteristics (m2).