Literature DB >> 28589440

Intrinsic disorder here, there, and everywhere, and nowhere to escape from it.

Vladimir N Uversky1,2.   

Abstract

The concept of protein intrinsic disorder persistently penetrates into all areas of modern protein science. It cannot be ignored anymore, and cannot be shrugged off, as it represents a vital feature (or, more correctly, a broad spectrum of important features), which, when added to and mixed with features arising from the well established protein structure-function paradigm, complete the picture of a functioning protein. The field of protein intrinsic disorder is very dynamic and fast developing. This Multi-Author Review represents a snapshot of this field by introducing some recent advances. Articles assembled in this Multi-Author Review introduce some of the new aspects of intrinsic disorder, outline some fascinating ideas related to the intrinsically disordered proteins, their structure, and functionality, and show challenges related to the analysis of proteins carrying intrinsic disorder.

Entities:  

Keywords:  Conditionally disordered protein; Disorder prediction; Drug target; Evolutionary dynamics; Fuzzy complexes; Intrinsically disordered proteins; Plant proteins; Protein-protein interactions; Signaling; Transmembrane proteins; Viral proteins

Mesh:

Substances:

Year:  2017        PMID: 28589440     DOI: 10.1007/s00018-017-2554-5

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  25 in total

Review 1.  Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.

Authors:  P E Wright; H J Dyson
Journal:  J Mol Biol       Date:  1999-10-22       Impact factor: 5.469

2.  Intrinsically disordered proteins as crucial constituents of cellular aqueous two phase systems and coacervates.

Authors:  Vladimir N Uversky; Irina M Kuznetsova; Konstantin K Turoverov; Boris Zaslavsky
Journal:  FEBS Lett       Date:  2014-11-29       Impact factor: 4.124

Review 3.  Real-time NMR monitoring of biological activities in complex physiological environments.

Authors:  Matthew J Smith; Christopher B Marshall; Francois-Xavier Theillet; Andres Binolfi; Philipp Selenko; Mitsuhiko Ikura
Journal:  Curr Opin Struct Biol       Date:  2015-02-27       Impact factor: 6.809

Review 4.  Unusual biophysics of intrinsically disordered proteins.

Authors:  Vladimir N Uversky
Journal:  Biochim Biophys Acta       Date:  2012-12-23

Review 5.  Physicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs).

Authors:  Francois-Xavier Theillet; Andres Binolfi; Tamara Frembgen-Kesner; Karan Hingorani; Mohona Sarkar; Ciara Kyne; Conggang Li; Peter B Crowley; Lila Gierasch; Gary J Pielak; Adrian H Elcock; Anne Gershenson; Philipp Selenko
Journal:  Chem Rev       Date:  2014-06-05       Impact factor: 60.622

Review 6.  Live cell NMR.

Authors:  Darón I Freedberg; Philipp Selenko
Journal:  Annu Rev Biophys       Date:  2014       Impact factor: 12.981

Review 7.  Intrinsically disordered proteins in cellular signalling and regulation.

Authors:  Peter E Wright; H Jane Dyson
Journal:  Nat Rev Mol Cell Biol       Date:  2015-01       Impact factor: 94.444

8.  Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein.

Authors:  Chi W Pak; Martyna Kosno; Alex S Holehouse; Shae B Padrick; Anuradha Mittal; Rustam Ali; Ali A Yunus; David R Liu; Rohit V Pappu; Michael K Rosen
Journal:  Mol Cell       Date:  2016-07-07       Impact factor: 17.970

Review 9.  A decade and a half of protein intrinsic disorder: biology still waits for physics.

Authors:  Vladimir N Uversky
Journal:  Protein Sci       Date:  2013-04-29       Impact factor: 6.725

Review 10.  Assemblages: functional units formed by cellular phase separation.

Authors:  Jeffrey A Toretsky; Peter E Wright
Journal:  J Cell Biol       Date:  2014-09-01       Impact factor: 10.539

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  8 in total

Review 1.  Principles for Integrative Structural Biology Studies.

Authors:  Michael P Rout; Andrej Sali
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

Review 2.  Targeting Intrinsically Disordered Proteins through Dynamic Interactions.

Authors:  Jianlin Chen; Xiaorong Liu; Jianhan Chen
Journal:  Biomolecules       Date:  2020-05-11

3.  Intrinsically disordered proteins and structured proteins with intrinsically disordered regions have different functional roles in the cell.

Authors:  Antonio Deiana; Sergio Forcelloni; Alessandro Porrello; Andrea Giansanti
Journal:  PLoS One       Date:  2019-08-19       Impact factor: 3.240

4.  Why do eukaryotic proteins contain more intrinsically disordered regions?

Authors:  Walter Basile; Marco Salvatore; Claudio Bassot; Arne Elofsson
Journal:  PLoS Comput Biol       Date:  2019-07-22       Impact factor: 4.475

5.  OGT (O-GlcNAc Transferase) Selectively Modifies Multiple Residues Unique to Lamin A.

Authors:  Dan N Simon; Amanda Wriston; Qiong Fan; Jeffrey Shabanowitz; Alyssa Florwick; Tejas Dharmaraj; Sherket B Peterson; Yosef Gruenbaum; Cathrine R Carlson; Line M Grønning-Wang; Donald F Hunt; Katherine L Wilson
Journal:  Cells       Date:  2018-05-17       Impact factor: 6.600

6.  Shear-Induced Amyloid Formation in the Brain: III. The Roles of Shear Energy and Seeding in a Proposed Shear Model.

Authors:  Conrad N Trumbore
Journal:  J Alzheimers Dis       Date:  2018       Impact factor: 4.472

7.  SPOT-Disorder2: Improved Protein Intrinsic Disorder Prediction by Ensembled Deep Learning.

Authors:  Jack Hanson; Kuldip K Paliwal; Thomas Litfin; Yaoqi Zhou
Journal:  Genomics Proteomics Bioinformatics       Date:  2020-03-13       Impact factor: 7.691

8.  Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet.

Authors:  Alexandre G de Brevern
Journal:  Biomolecules       Date:  2020-07-20
  8 in total

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