| Literature DB >> 28588470 |
Bo Peng1,2,3, Jieru Lu4, Aditya Saxena5, Zhiyong Zhou1, Tao Zhang3, Suhong Wang6, Yakang Dai1.
Abstract
Purpose: This study is to exam self-esteem related brain morphometry on brain magnetic resonance (MR) images using multilevel-features-based classification method. Method: The multilevel region of interest (ROI) features consist of two types of features: (i) ROI features, which include gray matter volume, white matter volume, cerebrospinal fluid volume, cortical thickness, and cortical surface area, and (ii) similarity features, which are based on similarity calculation of cortical thickness between ROIs. For each feature type, a hybrid feature selection method, comprising of filter-based and wrapper-based algorithms, is used to select the most discriminating features. ROI features and similarity features are integrated by using multi-kernel support vector machines (SVMs) with appropriate weighting factor.Entities:
Keywords: brain connections; magnetic resonance imaging (MRI); multi-kernel support vector machine; multilevel ROI features; self-esteem
Year: 2017 PMID: 28588470 PMCID: PMC5438414 DOI: 10.3389/fncom.2017.00037
Source DB: PubMed Journal: Front Comput Neurosci ISSN: 1662-5188 Impact factor: 2.380
Subject characteristics.
| No. of subjects (n) | 34 | 34 | 68 | ||
| Gender (M/F) | 19/15 | 16/18 | 35/33 | chi-sq = 0.05 | 0.83 |
| Age (years) | 21.90 ± 1.16 | 22.53 ± 1.42 | 22.21 ± 1.35 | ||
| Age range (years) | 21–26 | 21–26 | 21–26 | 0.15 | |
| Rosenberg Scale | 25.35 ± 0.81 | 17.86 ± 3.35 | 21.61 ± 3.90 | <0.001 | |
p < 0.05.
Figure 1Framework of the classification method using multilevel ROI features on T1-weighted brain MR images.
Mean value and standard deviation of the classification performance using different feature types.
| ACC | 83.5882 (4.9001) | 86.3088 (4.1182) | 69.5882 (6.0336) | 88.6912 (4.4496) | 68.2500 (4.1176) | 76.4118 (7.8679) | 95.2353 (2.7921) | 96.6618 (2.3262) |
| AUC | 0.9193 (0.0455) | 0.9427 (0.0359) | 0.7665 (0.0630) | 0.9663 (0.0301) | 0.7457 (0.0382) | 0.8241 (0.9334) | 0.9893 (0.0019) | 0.9977 (0.0027) |
| SEN | 0.8151 (0.0490) | 0.8532 (0.0412) | 0.6853 (0.0603) | 0.8772 (0.0445) | 0.6726 (0.0412) | 0.7542 (0.0787) | 0.9424 (0.0279) | 0.9567 (0.0233) |
| SPE | 0.8391 (0.0781) | 0.8429 (0.0619) | 0.6594 (0.1266) | 0.9065 (0.0884) | 0.6665 (0.0890) | 0.7041 (0.0996) | 0.9641 (0.0391) | 0.9662 (0.0356) |
| Y | 0.8327 (0.0681) | 0.8832 (0.0693) | 0.7324 (0.0940) | 0.8674 (0.0629) | 0.6985 (0.0692) | 0.8241 (0.1307) | 0.9506 (0.0469) | 0.9671 (0.0340) |
| F | 0.6718 (0.0980) | 0.7262 (0.0824) | 0.3918 (0.1207) | 0.7738 (0.0890) | 0.3650 (0.0824) | 0.5282 (0.1574) | 0.9247 (0.0558) | 0.9332 (0.0465) |
| BAC | 0.8349 (0.0524) | 0.8574 (0.0459) | 0.6777 (0.0823) | 0.8877 (0.0562) | 0.6670 (0.0528) | 0.7464 (0.0765) | 0.9529 (0.0281) | 0.9665 (0.0237) |
| <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | <0.001 | – |
GM, gray matter volume; WM, white matter volume; CSF, cerebrospinal volume; GM+WM+CSF, union of gray matter volume, white matter volume, and cerebrospinal volume; Thickness, cortical thickness; Area, cortical surface area; Similarity, similarity feature of cortical thickness; Multilevel, integration of gray matter volume, white matter volume, cerebrospinal volume, cortical thickness, cortical surface area, and similarity feature; ACC, accuracy; AUC, area under receiver operating characteristic curve; SEN, sensitivity; SPE, specificity; Y, Youden's index; F, F-score; BAC, Balanced accuracy.
Figure 2Boxplot of classification accuracy for different feature types.
Figure 3Classification performance with multilevel ROI features using different weighting factors. The weight for the ROI features increases from left to right (range from 0 to 1).
Top 15 most discriminating ROI features and similarity features that were selected using the proposed classification framework.
| 1 | Middle frontal gyrus_R_W | 185 | Anterior cingulate gyrus_L-Middle occipital gyrus_L | 95 |
| 2 | Superior occipital gyrus_R_G | 144 | Middle frontal gyrus_R-Inferior frontal gyrus (triangular)_R | 93 |
| 3 | Precentral gyrus_R_T | 141 | Middle frontal gyrus_L-Middle occipital gyrus_L | 92 |
| 4 | Middle occipital gyrus_L_G | 102 | Middle occipital gyrus_L-Fusiform gyrus_L | 85 |
| 5 | Supplementary motor area_R_W | 86 | Middle frontal gyrus_R-Superior occipital gyrus_R | 83 |
| 6 | Posterior cingulate gyrus_L_C | 75 | Orbitofrontal cortex (superior)_L-Superior frontal gyrus (medial)_L | 74 |
| 7 | Middle frontal gyrus_L_W | 73 | Precentral gyrus_L-Inferior frontal gyrus (opercular)_L | 73 |
| 8 | Posterior cingulate gyrus_L_T | 70 | Superior frontal gyrus (dorsal)_R-Middle frontal gyrus_R | 68 |
| 9 | Middle occipital gyrus_R_T | 68 | Cuneus_L-Middle occipital gyrus_L | 61 |
| 10 | Angular gyrus_R_W | 64 | Precentral gyrus_R-Inferior frontal gyrus (opercular)_L | 54 |
| 11 | Precuneus_R_T | 58 | Middle frontal gyrus_R-Temporal pole (superior)_R | 53 |
| 12 | Cuneus_L_W | 58 | Middle frontal gyrus_R-Angular gyrus_L | 48 |
| 13 | Middle temporal gyrus_L_A | 54 | Middle frontal gyrus_L-Orbitofrontal cortex (inferior)_L | 48 |
| 14 | Precuneus_L_T | 53 | Middle frontal gyrus_R-Rectus gyrus_R | 46 |
| 15 | Middle occipital gyrus_L_T | 53 | Anterior cingulate gyrus_R-Angular gyrus_L | 42 |
L, left hemisphere; R, right hemisphere; G, gray matter volume; W, white matter volume; C, cerebrospinal volume; T, cortical thickness; A, cortical surface area; Frequency, selected frequency over 100 repetitions of two-fold crossvalidation.
Figure 4The most discriminating ROI features projected onto the cortical surface.
Figure 5Connection graph of the most discriminating similarity features. Red color lines indicate relation in the same hemisphere, and gray color lines indicate relation in the two sides of the brain. Thickness of each line reflects its selection frequency, e.g., a thicker line indicates a higher selection frequency. The abbreviations of the regions can be referred to Table 4.
Regions of interest (ROIs) defined in the automated anatomical labeling (AAL) template.
| 1, 2 | Precentral gyrus | PreCG | 41, 42 | Cuneus | CUN |
| 3, 4 | Superior frontal gyrus (dorsal) | SFGdor | 43, 44 | Lingual gyrus | LING |
| 5, 6 | Orbitofrontal cortex (superior) | ORBsup | 45, 46 | Superior occipital gyrus | SOG |
| 7, 8 | Middle frontal gyrus | MFG | 47, 48 | Middle occipital gyrus | MOG |
| 9, 10 | Orbitofrontal cortex (middle) | ORBmid | 49, 50 | Inferior occipital gyrus | IOG |
| 11, 12 | Inferior frontal gyrus (opercular) | IFGoperc | 51, 52 | Fusiform gyrus | FFG |
| 13, 14 | Inferior frontal gyrus (triangular) | IFGtriang | 53, 54 | Postcentral gyrus | PoCG |
| 15, 16 | Orbitofrontal cortex (inferior) | ORBinf | 55, 56 | Superior parietal gyrus | SPG |
| 17, 18 | Rolandic operculum | ROL | 57, 58 | Inferior parietal lobule | IPL |
| 19, 20 | Supplementary motor area | SMA | 59, 60 | Supramarginal gyrus | SMG |
| 21, 22 | Olfactory | OLF | 61, 62 | Angular gyrus | ANG |
| 23, 24 | Superior frontal gyrus (medial) | SFGmed | 63, 64 | Precuneus | PCUN |
| 25, 26 | Orbitofrontal cortex (medial) | ORBmed | 65, 66 | Paracentral lobule | PCL |
| 27, 28 | Rectus gyrus | REC | 67, 68 | Heschl gyrus | HES |
| 29, 30 | Insula | INS | 69, 70 | Superior temporal gyrus | STG |
| 31, 32 | Anterior cingulate gyrus | ACG | 71, 72 | Temporal pole (superior) | TPOsup |
| 33, 34 | Middle cingulate gyrus | MCG | 73, 74 | Middle temporal gyrus | MTG |
| 35, 36 | Posterior cingulate gyrus | PCG | 75, 76 | Temporal pole (middle) | TPOmid |
| 37, 38 | ParaHippocampal gyrus | PHG | 77, 78 | Inferior temporal gyrus | ITG |
| 39, 40 | Calcarine cortex | CAL |