Literature DB >> 28572091

The Ser/Thr Protein Kinase Protein-Protein Interaction Map of M. tuberculosis.

Fan-Lin Wu1,2, Yin Liu1,2, He-Wei Jiang1,2, Yi-Zhao Luan3, Hai-Nan Zhang1,2, Xiang He1,2,4, Zhao-Wei Xu1,2, Jing-Li Hou5, Li-Yun Ji1, Zhi Xie3, Daniel M Czajkowsky4, Wei Yan1, Jiao-Yu Deng6, Li-Jun Bi7,8,9, Xian-En Zhang7, Sheng-Ce Tao10,2,4.   

Abstract

Mycobacterium tuberculosis (Mtb) is the causative agent of tuberculosis, the leading cause of death among all infectious diseases. There are 11 eukaryotic-like serine/threonine protein kinases (STPKs) in Mtb, which are thought to play pivotal roles in cell growth, signal transduction and pathogenesis. However, their underlying mechanisms of action remain largely uncharacterized. In this study, using a Mtb proteome microarray, we have globally identified the binding proteins in Mtb for all of the STPKs, and constructed the first STPK protein interaction (KPI) map that includes 492 binding proteins and 1,027 interactions. Bioinformatics analysis showed that the interacting proteins reflect diverse functions, including roles in two-component system, transcription, protein degradation, and cell wall integrity. Functional investigations confirmed that PknG regulates cell wall integrity through key components of peptidoglycan (PG) biosynthesis, e.g. MurC. The global STPK-KPIs network constructed here is expected to serve as a rich resource for understanding the key signaling pathways in Mtb, thus facilitating drug development and effective control of Mtb.
© 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

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Year:  2017        PMID: 28572091      PMCID: PMC5546200          DOI: 10.1074/mcp.M116.065771

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  56 in total

1.  Exploiting the kernel trick to correlate fragment ions for peptide identification via tandem mass spectrometry.

Authors:  Yan Fu; Qiang Yang; Ruixiang Sun; Dequan Li; Rong Zeng; Charles X Ling; Wen Gao
Journal:  Bioinformatics       Date:  2004-03-25       Impact factor: 6.937

2.  Dynamic protein-protein interaction wiring of the human spliceosome.

Authors:  Anna Hegele; Atanas Kamburov; Arndt Grossmann; Chrysovalantis Sourlis; Sylvia Wowro; Mareike Weimann; Cindy L Will; Vlad Pena; Reinhard Lührmann; Ulrich Stelzl
Journal:  Mol Cell       Date:  2012-02-24       Impact factor: 17.970

3.  Profiling the human protein-DNA interactome reveals ERK2 as a transcriptional repressor of interferon signaling.

Authors:  Shaohui Hu; Zhi Xie; Akishi Onishi; Xueping Yu; Lizhi Jiang; Jimmy Lin; Hee-sool Rho; Crystal Woodard; Hong Wang; Jun-Seop Jeong; Shunyou Long; Xiaofei He; Herschel Wade; Seth Blackshaw; Jiang Qian; Heng Zhu
Journal:  Cell       Date:  2009-10-30       Impact factor: 41.582

4.  Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases.

Authors:  Sladjana Prisic; Selasi Dankwa; Daniel Schwartz; Michael F Chou; Jason W Locasale; Choong-Min Kang; Guy Bemis; George M Church; Hanno Steen; Robert N Husson
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

5.  Global analysis of protein activities using proteome chips.

Authors:  H Zhu; M Bilgin; R Bangham; D Hall; A Casamayor; P Bertone; N Lan; R Jansen; S Bidlingmaier; T Houfek; T Mitchell; P Miller; R A Dean; M Gerstein; M Snyder
Journal:  Science       Date:  2001-07-26       Impact factor: 47.728

6.  Bcl2-associated athanogene 3 interactome analysis reveals a new role in modulating proteasome activity.

Authors:  Ying Chen; Li-Na Yang; Li Cheng; Shun Tu; Shu-Juan Guo; Huang-Ying Le; Qian Xiong; Ran Mo; Chong-Yang Li; Jun-Seop Jeong; Lizhi Jiang; Seth Blackshaw; Li-Jun Bi; Heng Zhu; Sheng-Ce Tao; Feng Ge
Journal:  Mol Cell Proteomics       Date:  2013-07-03       Impact factor: 5.911

7.  Dissecting virulence pathways of Mycobacterium tuberculosis through protein-protein association.

Authors:  Amit Singh; Deborah Mai; Ashwani Kumar; Adrie J C Steyn
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-14       Impact factor: 11.205

8.  Mycobacterium tuberculosis proteome microarray for global studies of protein function and immunogenicity.

Authors:  Jiaoyu Deng; Lijun Bi; Lin Zhou; Shu-juan Guo; Joy Fleming; He-wei Jiang; Ying Zhou; Jia Gu; Qiu Zhong; Zong-xiu Wang; Zhonghui Liu; Rui-ping Deng; Jing Gao; Tao Chen; Wenjuan Li; Jing-fang Wang; Xude Wang; Haicheng Li; Feng Ge; Guofeng Zhu; Hai-nan Zhang; Jing Gu; Fan-lin Wu; Zhiping Zhang; Dianbing Wang; Haiying Hang; Yang Li; Li Cheng; Xiang He; Sheng-ce Tao; Xian-en Zhang
Journal:  Cell Rep       Date:  2014-12-11       Impact factor: 9.423

9.  Global phosphoproteomic analysis reveals diverse functions of serine/threonine/tyrosine phosphorylation in the model cyanobacterium Synechococcus sp. strain PCC 7002.

Authors:  Ming-kun Yang; Zhi-xian Qiao; Wan-yi Zhang; Qian Xiong; Jia Zhang; Tao Li; Feng Ge; Jin-dong Zhao
Journal:  J Proteome Res       Date:  2013-03-18       Impact factor: 4.466

10.  Genetic and biochemical analysis of the serine/threonine protein kinases PknA, PknB, PknG and PknL of Corynebacterium glutamicum: evidence for non-essentiality and for phosphorylation of OdhI and FtsZ by multiple kinases.

Authors:  Christian Schultz; Axel Niebisch; Astrid Schwaiger; Ulrike Viets; Sabine Metzger; Marc Bramkamp; Michael Bott
Journal:  Mol Microbiol       Date:  2009-09-28       Impact factor: 3.501

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  13 in total

Review 1.  Developments and Applications of Functional Protein Microarrays.

Authors:  Guan-Da Syu; Jessica Dunn; Heng Zhu
Journal:  Mol Cell Proteomics       Date:  2020-04-17       Impact factor: 5.911

Review 2.  Modulation of the M. tuberculosis cell envelope between replicating and non-replicating persistent bacteria.

Authors:  Haley Stokas; Heather L Rhodes; Georgiana E Purdy
Journal:  Tuberculosis (Edinb)       Date:  2020-10-05       Impact factor: 3.131

Review 3.  Phosphoproteomic Approaches to Discover Novel Substrates of Mycobacterial Ser/Thr Protein Kinases.

Authors:  Seanantha S Baros; Jonathan M Blackburn; Nelson C Soares
Journal:  Mol Cell Proteomics       Date:  2019-12-15       Impact factor: 5.911

4.  Systematic Identification of Mycobacterium tuberculosis Effectors Reveals that BfrB Suppresses Innate Immunity.

Authors:  Xiang He; He-Wei Jiang; Hong Chen; Hai-Nan Zhang; Yin Liu; Zhao-Wei Xu; Fan-Lin Wu; Shu-Juan Guo; Jing-Li Hou; Ming-Kun Yang; Wei Yan; Jiao-Yu Deng; Li-Jun Bi; Xian-En Zhang; Sheng-Ce Tao
Journal:  Mol Cell Proteomics       Date:  2017-10-10       Impact factor: 5.911

5.  Dynamic Characterization of Protein and Posttranslational Modification Levels in Mycobacterial Cholesterol Catabolism.

Authors:  Jun-Yu Xu; Lei Zhao; Ying Xu; Bolin Li; Linhui Zhai; Minjia Tan; Bang-Ce Ye
Journal:  mSystems       Date:  2020-01-07       Impact factor: 6.496

6.  Computational Identification of the Proteins Associated With Quorum Sensing and Biofilm Formation in Mycobacterium tuberculosis.

Authors:  Shubhada R Hegde
Journal:  Front Microbiol       Date:  2020-01-22       Impact factor: 5.640

Review 7.  Molecular Targets Related Drug Resistance Mechanisms in MDR-, XDR-, and TDR-Mycobacterium tuberculosis Strains.

Authors:  H M Adnan Hameed; Md Mahmudul Islam; Chiranjibi Chhotaray; Changwei Wang; Yang Liu; Yaoju Tan; Xinjie Li; Shouyong Tan; Vincent Delorme; Wing W Yew; Jianxiong Liu; Tianyu Zhang
Journal:  Front Cell Infect Microbiol       Date:  2018-04-10       Impact factor: 5.293

8.  Two Faces of CwlM, an Essential PknB Substrate, in Mycobacterium tuberculosis.

Authors:  Obolbek Turapov; Francesca Forti; Baleegh Kadhim; Daniela Ghisotti; Jad Sassine; Anna Straatman-Iwanowska; Andrew R Bottrill; Patrick J Moynihan; Russell Wallis; Philippe Barthe; Martin Cohen-Gonsaud; Paul Ajuh; Waldemar Vollmer; Galina V Mukamolova
Journal:  Cell Rep       Date:  2018-10-02       Impact factor: 9.423

9.  AbmR (Rv1265) is a novel transcription factor of Mycobacterium tuberculosis that regulates host cell association and expression of the non-coding small RNA Mcr11.

Authors:  Roxie C Girardin; Guangchun Bai; Jie He; Haixin Sui; Kathleen A McDonough
Journal:  Mol Microbiol       Date:  2018-10-21       Impact factor: 3.501

Review 10.  In Vivo Methods to Study Protein-Protein Interactions as Key Players in Mycobacterium Tuberculosis Virulence.

Authors:  Romain Veyron-Churlet; Camille Locht
Journal:  Pathogens       Date:  2019-10-01
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