Literature DB >> 32303587

Developments and Applications of Functional Protein Microarrays.

Guan-Da Syu1, Jessica Dunn2, Heng Zhu3.   

Abstract

Protein microarrays are crucial tools in the study of proteins in an unbiased, high-throughput manner, as they allow for characterization of up to thousands of individually purified proteins in parallel. The adaptability of this technology has enabled its use in a wide variety of applications, including the study of proteome-wide molecular interactions, analysis of post-translational modifications, identification of novel drug targets, and examination of pathogen-host interactions. In addition, the technology has also been shown to be useful in profiling antibody specificity, as well as in the discovery of novel biomarkers, especially for autoimmune diseases and cancers. In this review, we will summarize the developments that have been made in protein microarray technology in both in basic and translational research over the past decade. We will also introduce a novel membrane protein array, the GPCR-VirD array, and discuss the future directions of functional protein microarrays.
© 2020 Syu et al.

Entities:  

Keywords:  Protein array; biofluids; diagnostic; pathogens; protein-protein interactions

Year:  2020        PMID: 32303587      PMCID: PMC7261817          DOI: 10.1074/mcp.R120.001936

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  119 in total

1.  Serum and tissue profiling in bladder cancer combining protein and tissue arrays.

Authors:  Esteban Orenes-Piñero; Rodrigo Barderas; Daniel Rico; J Ignacio Casal; David Gonzalez-Pisano; Jose Navajo; Ferran Algaba; Josep Maria Piulats; Marta Sanchez-Carbayo
Journal:  J Proteome Res       Date:  2010-01       Impact factor: 4.466

2.  Applications of phospholipid bilayer nanodiscs in the study of membranes and membrane proteins.

Authors:  Abhinav Nath; William M Atkins; Stephen G Sligar
Journal:  Biochemistry       Date:  2007-01-31       Impact factor: 3.162

3.  New autoantigens in rheumatoid arthritis (RA): screening 8268 protein arrays with sera from patients with RA.

Authors:  I Auger; N Balandraud; J Rak; N Lambert; M Martin; J Roudier
Journal:  Ann Rheum Dis       Date:  2008-10-28       Impact factor: 19.103

4.  Global Profiling of PknG Interactions Using a Human Proteome Microarray Reveals Novel Connections with CypA.

Authors:  Fan-Lin Wu; Yin Liu; Hai-Nan Zhang; He-Wei Jiang; Li Cheng; Shu-Juan Guo; Jiao-Yu Deng; Li-Jun Bi; Xian-En Zhang; Hua-Fang Gao; Sheng-Ce Tao
Journal:  Proteomics       Date:  2018-10-24       Impact factor: 3.984

5.  Protein array-based profiling of CSF identifies RBPJ as an autoantigen in multiple sclerosis.

Authors:  Luis Querol; Pamela L Clark; Mary A Bailey; Chris Cotsapas; Anne H Cross; David A Hafler; Steven H Kleinstein; Jae-Yun Lee; Gur Yaari; Simon N Willis; Kevin C O'Connor
Journal:  Neurology       Date:  2013-08-06       Impact factor: 9.910

6.  Pim Kinase Interacts with Nonstructural 5A Protein and Regulates Hepatitis C Virus Entry.

Authors:  Chorong Park; Saehong Min; Eun-Mee Park; Yun-Sook Lim; Sangmin Kang; Tetsuro Suzuki; Eui-Cheol Shin; Soon B Hwang
Journal:  J Virol       Date:  2015-07-22       Impact factor: 5.103

7.  Diagnosis of Parkinson's disease based on disease-specific autoantibody profiles in human sera.

Authors:  Min Han; Eric Nagele; Cassandra DeMarshall; Nimish Acharya; Robert Nagele
Journal:  PLoS One       Date:  2012-02-22       Impact factor: 3.240

8.  A High Throughput Protein Microarray Approach to Classify HIV Monoclonal Antibodies and Variant Antigens.

Authors:  Emmanuel Y Dotsey; Andrea Gorlani; Sampat Ingale; Chad J Achenbach; Donald N Forthal; Philip L Felgner; Johannes S Gach
Journal:  PLoS One       Date:  2015-05-04       Impact factor: 3.240

9.  Serological autoantibody profiling of type 1 diabetes by protein arrays.

Authors:  Shane Miersch; Xiaofang Bian; Garrick Wallstrom; Sahar Sibani; Tanya Logvinenko; Clive H Wasserfall; Desmond Schatz; Mark Atkinson; Ji Qiu; Joshua LaBaer
Journal:  J Proteomics       Date:  2013-10-20       Impact factor: 4.044

10.  Next-generation high-density self-assembling functional protein arrays.

Authors:  Niroshan Ramachandran; Jacob V Raphael; Eugenie Hainsworth; Gokhan Demirkan; Manuel G Fuentes; Andreas Rolfs; Yanhui Hu; Joshua LaBaer
Journal:  Nat Methods       Date:  2008-05-11       Impact factor: 28.547

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  11 in total

Review 1.  Nanoparticles in the diagnosis and treatment of vascular aging and related diseases.

Authors:  Hui Xu; Shuang Li; You-Shuo Liu
Journal:  Signal Transduct Target Ther       Date:  2022-07-11

2.  Glass Slide-Printed Protein Arrays as a Platform to Discover Serodiagnostic Antigens Against Bacterial Infections.

Authors:  Alfonso Olaya-Abril; Manuel J Rodríguez-Ortega
Journal:  Methods Mol Biol       Date:  2021

3.  Virion Display: A High-Throughput Method to Express Functional Membrane Proteins.

Authors:  Guan-Da Syu; Eric Johansen; Heng Zhu
Journal:  Curr Protoc Mol Biol       Date:  2020-09

4.  Multifaceted Regulation of Akt by Diverse C-Terminal Post-translational Modifications.

Authors:  Antonieta L Salguero; Maggie Chen; Aaron T Balana; Nam Chu; Hanjie Jiang; Brad A Palanski; Hwan Bae; Katharine M Wright; Sara Nathan; Heng Zhu; Sandra B Gabelli; Matthew R Pratt; Philip A Cole
Journal:  ACS Chem Biol       Date:  2021-12-23       Impact factor: 5.100

5.  SERPINH1, Targeted by miR-29b, Modulated Proliferation and Migration of Human Retinal Endothelial Cells Under High Glucose Conditions.

Authors:  Lingfei Hu; Yinping Liu; Chaobing Wei; Huixiang Jin; Lixin Mei; Changfan Wu
Journal:  Diabetes Metab Syndr Obes       Date:  2021-08-04       Impact factor: 3.168

6.  Development of SARS-CoV-2 variant protein microarray for profiling humoral immunity in vaccinated subjects.

Authors:  Tzong-Shiann Ho; Pin-Xian Du; Wen-Yu Su; Harvey M Santos; Ya-Lan Lin; Yi-Yu Chou; Batuhan Birol Keskin; Chi Ho Pau; Guan-Da Syu
Journal:  Biosens Bioelectron       Date:  2022-02-08       Impact factor: 10.618

Review 7.  Proteomics technologies for cancer liquid biopsies.

Authors:  Zhiyong Ding; Nan Wang; Ning Ji; Zhe-Sheng Chen
Journal:  Mol Cancer       Date:  2022-02-15       Impact factor: 27.401

Review 8.  Macroporous Polymer Monoliths in Thin Layer Format.

Authors:  Evgenia Korzhikova-Vlakh; Mariia Antipchik; Tatiana Tennikova
Journal:  Polymers (Basel)       Date:  2021-03-27       Impact factor: 4.329

9.  How Far Are We from the Completion of the Human Protein Interactome Reconstruction?

Authors:  Georgios N Dimitrakopoulos; Maria I Klapa; Nicholas K Moschonas
Journal:  Biomolecules       Date:  2022-01-15

10.  Enzymatic analysis of WWP2 E3 ubiquitin ligase using protein microarrays identifies autophagy-related substrates.

Authors:  Hanjie Jiang; Claire Y Chiang; Zan Chen; Sara Nathan; Gabriel D'Agostino; Joao A Paulo; Guang Song; Heng Zhu; Sandra B Gabelli; Philip A Cole
Journal:  J Biol Chem       Date:  2022-03-21       Impact factor: 5.486

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